Variant report

Variant	rs574576987
Chromosome Location	chr13:38925306-38925307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38921186..38924004-chr13:38924043..38925621,2	MCF-7	breast:
2	chr13:38924316..38926531-chr13:38938318..38940718,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120686	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv561512	chr13:38881318-38930893	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900005	chr13:38881318-38932949	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv976234	chr13:38924727-38933604	Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv900006	chr13:38924871-38970825	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38922600-38926000	Active TSS	Right Atrium	heart
2	chr13:38922800-38926200	Active TSS	Right Ventricle	heart
3	chr13:38923000-38925400	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr13:38923000-38925400	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr13:38923000-38925400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:38923000-38925400	Active TSS	Left Ventricle	heart
7	chr13:38923000-38925400	Active TSS	Pancreas	Pancrea
8	chr13:38923000-38925600	Active TSS	A549	lung
9	chr13:38923000-38926000	Active TSS	Psoas Muscle	Psoas
10	chr13:38924200-38925400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:38924400-38938800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr13:38924600-38925400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:38924600-38925400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr13:38924600-38925400	Flanking Active TSS	Fetal Brain Male	brain
15	chr13:38924600-38925400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr13:38924600-38925600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr13:38924600-38925600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:38924600-38925600	Flanking Active TSS	Dnd41	blood
19	chr13:38924600-38925800	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr13:38924600-38925800	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr13:38924600-38926000	Flanking Active TSS	Brain Germinal Matrix	brain
22	chr13:38924600-38926000	Flanking Active TSS	Colon Smooth Muscle	Colon
23	chr13:38924600-38926000	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr13:38924600-38926000	Flanking Active TSS	Fetal Brain Female	brain
25	chr13:38924600-38926200	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr13:38924800-38925400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr13:38924800-38925400	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
28	chr13:38924800-38925400	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr13:38924800-38925400	Flanking Active TSS	Fetal Intestine Small	intestine
30	chr13:38924800-38925400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr13:38924800-38925400	Flanking Active TSS	Hela-S3	cervix
32	chr13:38924800-38925600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr13:38924800-38925600	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr13:38924800-38925600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr13:38924800-38925800	Enhancers	Small Intestine	intestine
36	chr13:38924800-38925800	Enhancers	Stomach Mucosa	stomach
37	chr13:38924800-38926000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr13:38924800-38936400	Weak transcription	Esophagus	oesophagus
39	chr13:38924800-38937000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr13:38924800-38937200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr13:38924800-38937400	Weak transcription	Gastric	stomach
42	chr13:38924800-38939000	Weak transcription	Lung	lung
43	chr13:38924800-38939400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr13:38925000-38925400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr13:38925000-38925400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr13:38925000-38925400	Enhancers	Primary T cells fromperipheralblood	blood
47	chr13:38925000-38925400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr13:38925000-38925400	Weak transcription	Placenta	Placenta
49	chr13:38925000-38925400	Flanking Active TSS	NHDF-Ad	bronchial
50	chr13:38925000-38925600	Enhancers	Primary hematopoietic stem cells	blood

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