Variant report

Variant	rs574579244
Chromosome Location	chr7:26252554-26252555
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26251555..26253253-chr7:26253823..26256718,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NFE2L3-4	chr7:26252176-26252971	NONHSAT119623

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv1821097	chr7:26243108-26303403	Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3387859	chr7:26250827-26253925	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a
5	esv3383527	chr7:26250827-26254025	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a
6	esv1819223	chr7:26250940-26252966	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a
7	nsv970454	chr7:26251506-26254224	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a
8	nsv824030	chr7:26251625-26252871	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a
9	nsv824033	chr7:26251659-26252871	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a
10	nsv824034	chr7:26251668-26252871	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a
11	nsv824035	chr7:26251675-26252871	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a
12	nsv824036	chr7:26251685-26252871	Strong transcription Genic enhancers Weak transcription Enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a
13	esv18906	chr7:26251715-26252962	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26242800-26254000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:26244400-26271400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:26244800-26254200	Strong transcription	Fetal Muscle Trunk	muscle
4	chr7:26245200-26252800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:26245400-26252800	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr7:26245400-26252800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr7:26245400-26252800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:26245400-26252800	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr7:26245400-26253000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:26245400-26253000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:26245400-26253200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:26245400-26253200	Strong transcription	HSMM	muscle
13	chr7:26245400-26253600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:26245600-26253000	Strong transcription	Fetal Intestine Large	intestine
15	chr7:26245600-26253200	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:26245600-26253600	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:26245600-26253600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr7:26245600-26253600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:26245600-26253800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:26245800-26252600	Strong transcription	HMEC	breast
21	chr7:26245800-26252800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr7:26245800-26252800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr7:26245800-26252800	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:26245800-26252800	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr7:26245800-26252800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr7:26245800-26253000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:26245800-26253000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:26245800-26253000	Strong transcription	Placenta	Placenta
29	chr7:26245800-26253200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr7:26245800-26253200	Strong transcription	Primary hematopoietic stem cells	blood
31	chr7:26245800-26253200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr7:26245800-26254200	Strong transcription	Fetal Thymus	thymus
33	chr7:26245800-26257400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr7:26245800-26263400	Weak transcription	Fetal Brain Male	brain
35	chr7:26246000-26252800	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr7:26246000-26252800	Strong transcription	HSMMtube	muscle
37	chr7:26246000-26253000	Strong transcription	Adipose Nuclei	Adipose
38	chr7:26246000-26253000	Strong transcription	Duodenum Mucosa	Duodenum
39	chr7:26246000-26253200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr7:26246000-26253200	Strong transcription	Osteobl	bone
41	chr7:26246000-26253400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr7:26246000-26253600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr7:26246000-26253600	Strong transcription	Liver	Liver
44	chr7:26246000-26254200	Strong transcription	A549	lung
45	chr7:26246200-26252800	Strong transcription	NH-A	brain
46	chr7:26246200-26253000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr7:26246200-26253200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr7:26246200-26253600	Strong transcription	Fetal Brain Female	brain
49	chr7:26246400-26253000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr7:26246400-26253200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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