Variant report

Variant	rs5745799
Chromosome Location	chr12:118455013-118455014
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:118405835..118408999-chr12:118453081..118456822,7	MCF-7	breast:
2	chr12:118311233..118313937-chr12:118454547..118456173,3	K562	blood:
3	chr12:118454560..118456194-chr12:118498306..118500931,2	MCF-7	breast:
4	chr12:118450883..118457954-chr12:118495063..118502199,13	K562	blood:
5	chr12:118454516..118455051-chr20:49126412..49127241,2	Hela-S3	cervix:
6	chr12:118454477..118455037-chr15:75917667..75918625,2	Hela-S3	cervix:
7	chr12:118454191..118455028-chr6:43737829..43738504,2	Hela-S3	cervix:
8	chr12:118453491..118456024-chr12:118464128..118465788,2	MCF-7	breast:
9	chr12:118404870..118409245-chr12:118453149..118456741,6	MCF-7	breast:
10	chr12:118453440..118456018-chr12:118464200..118466334,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196396	Chromatin interaction
ENSG00000272114	Chromatin interaction
ENSG00000112715	Chromatin interaction
ENSG00000111445	Chromatin interaction
ENSG00000169371	Chromatin interaction
ENSG00000176871	Chromatin interaction
ENSG00000171435	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17440315	1.00[ASW][hapmap]
rs17440433	1.00[ASW][hapmap]
rs17512142	1.00[ASW][hapmap]
rs5745876	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560388	chr12:118391600-118482352	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118453800-118455200	Flanking Active TSS	Liver	Liver
2	chr12:118453800-118455200	Active TSS	GM12878-XiMat	blood
3	chr12:118453800-118455200	Active TSS	NHDF-Ad	bronchial
4	chr12:118453800-118455400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr12:118453800-118455400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:118453800-118455400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:118453800-118455600	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr12:118453800-118455600	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr12:118454000-118455200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr12:118454000-118455200	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr12:118454000-118455200	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr12:118454000-118455200	Active TSS	Muscle Satellite Cultured Cells	--
13	chr12:118454000-118455200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr12:118454000-118455200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:118454000-118455200	Active TSS	Placenta Amnion	Placenta Amnion
16	chr12:118454000-118455200	Active TSS	Psoas Muscle	Psoas
17	chr12:118454000-118455200	Active TSS	Right Atrium	heart
18	chr12:118454000-118455200	Active TSS	Right Ventricle	heart
19	chr12:118454000-118455400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr12:118454000-118455400	Active TSS	Ovary	ovary
21	chr12:118454000-118455400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr12:118454000-118455600	Active TSS	Thymus	Thymus
23	chr12:118454000-118455800	Active TSS	Colonic Mucosa	Colon
24	chr12:118454200-118455200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:118454200-118455200	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr12:118454200-118455200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
27	chr12:118454200-118455200	Active TSS	Hela-S3	cervix
28	chr12:118454200-118455200	Active TSS	K562	blood
29	chr12:118454200-118455400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr12:118454200-118455400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr12:118454200-118455400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr12:118454200-118455400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:118454200-118455600	Active TSS	H1 Cell Line	embryonic stem cell
34	chr12:118454200-118455600	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr12:118454200-118455600	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr12:118454200-118455600	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr12:118454200-118455600	Active TSS	Fetal Intestine Small	intestine
38	chr12:118454200-118455600	Active TSS	A549	lung
39	chr12:118454200-118455600	Active TSS	HSMM	muscle
40	chr12:118454200-118455800	Active TSS	H9 Cell Line	embryonic stem cell
41	chr12:118454200-118455800	Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr12:118454200-118455800	Active TSS	NHLF	lung
43	chr12:118454400-118455200	Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr12:118454400-118455200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
45	chr12:118454400-118455200	Active TSS	Esophagus	oesophagus
46	chr12:118454400-118455200	Active TSS	Gastric	stomach
47	chr12:118454400-118455200	Active TSS	Left Ventricle	heart
48	chr12:118454400-118455200	Active TSS	Lung	lung
49	chr12:118454400-118455200	Active TSS	Sigmoid Colon	Sigmoid Colon
50	chr12:118454400-118455200	Active TSS	HMEC	breast

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