Variant report

Variant	rs5745926
Chromosome Location	chr15:75646115-75646116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:39)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:39 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75646069-75646346	GM12892	blood:	n/a	n/a
2	POLR2A	chr15:75645782-75647478	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr15:75645755-75646439	GM12878	blood:	n/a	n/a
4	POLR2A	chr15:75645485-75647354	GM12892	blood:	n/a	n/a
5	POLR2A	chr15:75645974-75646483	HepG2	liver:	n/a	n/a
6	POLR2A	chr15:75645803-75646562	U87	brain:	n/a	n/a
7	RCOR1	chr15:75646044-75646124	HepG2	liver:	n/a	n/a
8	POLR2A	chr15:75645937-75646250	HUVEC	blood vessel:	n/a	n/a
9	POLR2A	chr15:75645895-75647030	K562	blood:	n/a	n/a
10	POLR2A	chr15:75645542-75647513	GM12892	blood:	n/a	n/a
11	POLR2A	chr15:75645575-75647400	GM12892	blood:	n/a	n/a
12	POLR2A	chr15:75645833-75646994	GM12891	blood:	n/a	n/a
13	POLR2A	chr15:75646098-75646612	K562	blood:	n/a	n/a
14	POLR2A	chr15:75646084-75646388	A549	lung:	n/a	n/a
15	POLR2A	chr15:75645759-75646922	GM12891	blood:	n/a	n/a
16	POLR2A	chr15:75645728-75646738	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr15:75645356-75646935	PFSK-1	brain:	n/a	n/a
18	PML	chr15:75646047-75646522	GM12878	blood:	n/a	n/a
19	POLR2A	chr15:75645790-75647370	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr15:75645684-75647468	K562	blood:	n/a	n/a
21	POLR2A	chr15:75645811-75647903	K562	blood:	n/a	n/a
22	POLR2A	chr15:75645800-75646652	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr15:75645848-75646139	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr15:75645488-75647513	SK-N-MC	brain:	n/a	n/a
25	POLR2A	chr15:75645546-75647808	A549	lung:	n/a	n/a
26	POLR2A	chr15:75645830-75646948	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr15:75645739-75646963	HepG2	liver:	n/a	n/a
28	POLR2A	chr15:75639141-75646939	HepG2	liver:	n/a	n/a
29	POLR2A	chr15:75645842-75646443	GM12891	blood:	n/a	n/a
30	POLR2A	chr15:75645996-75646683	HepG2	liver:	n/a	n/a
31	POLR2A	chr15:75645704-75647492	GM12878	blood:	n/a	n/a
32	POLR2A	chr15:75645515-75647968	K562	blood:	n/a	n/a
33	POLR2A	chr15:75645854-75646425	A549	lung:	n/a	n/a
34	POLR2A	chr15:75645539-75647060	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr15:75645809-75646556	U87	brain:	n/a	n/a
36	POLR2A	chr15:75645855-75646343	PANC-1	pancreas:	n/a	n/a
37	POLR2A	chr15:75645859-75646457	GM12878	blood:	n/a	n/a
38	POLR2A	chr15:75646087-75646202	A549	lung:	n/a	n/a
39	POLR2A	chr15:75645857-75646475	HepG2	liver:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:75646105-75646155	HCM	heart:	n/a
2	chr15:75646093-75646143	NHBE	bronchial:	n/a
3	chr15:75646093-75646143	AoSMC	blood vessel:	n/a
4	chr15:75646093-75646143	Hela-S3	cervix:	n/a
5	chr15:75646105-75646155	NT2-D1	testis:	n/a
6	chr15:75646105-75646155	LNCaP	prostate:	n/a
7	chr15:75646093-75646143	ovcar-3	ovarian:	n/a
8	chr15:75646093-75646143	PrEC	prostate:	n/a
9	chr15:75646093-75646143	NT2-D1	testis:	n/a
10	chr15:75646105-75646155	HUVEC	blood vessel:	n/a
11	chr15:75646105-75646155	AG10803	skin:	n/a
12	chr15:75646105-75646155	AoSMC	blood vessel:	n/a
13	chr15:75646093-75646143	AG09319	gingival:	n/a
14	chr15:75646093-75646143	SK-N-SH	brain:	n/a
15	chr15:75646105-75646155	SAEC	small airway:	n/a
16	chr15:75646093-75646143	HRCEpiC	kidney:	n/a
17	chr15:75646093-75646143	AG09309	skin:	n/a
18	chr15:75646093-75646143	NB4	blood:	n/a
19	chr15:75646093-75646143	HIPEpiC	eye:	n/a
20	chr15:75646093-75646143	A549	lung:	n/a
21	chr15:75646105-75646155	MCF10A-Er-Src	breast:	n/a
22	chr15:75646105-75646155	RPTEC	kidney:	n/a
23	chr15:75646093-75646143	GM12878	blood:	n/a
24	chr15:75646105-75646155	CMK	blood:	n/a
25	chr15:75646093-75646143	HCF	heart:	n/a
26	chr15:75646105-75646155	ProgFib	skin:	n/a
27	chr15:75646105-75646155	HCF	heart:	n/a
28	chr15:75646093-75646143	H1-hESC	embryonic stem cell:	embryo
29	chr15:75646093-75646143	HCM	heart:	n/a
30	chr15:75646105-75646155	PrEC	prostate:	n/a
31	chr15:75646105-75646155	HMEC	breast:	n/a
32	chr15:75646093-75646143	MCF10A-Er-Src	breast:	n/a
33	chr15:75646093-75646143	Caco-2	colon:	n/a
34	chr15:75646093-75646143	K562	blood:	n/a
35	chr15:75646105-75646155	NHBE	bronchial:	n/a
36	chr15:75646105-75646155	Caco-2	colon:	n/a
37	chr15:75646105-75646155	PFSK-1	brain:	n/a
38	chr15:75646105-75646155	HPAEpiC	pulmonary alveolar:	n/a
39	chr15:75646093-75646143	HPAEpiC	pulmonary alveolar:	n/a
40	chr15:75646093-75646143	BJ	skin:	n/a
41	chr15:75646105-75646155	BJ	skin:	n/a
42	chr15:75646105-75646155	HRCEpiC	kidney:	n/a
43	chr15:75646105-75646155	K562	blood:	n/a
44	chr15:75646105-75646155	HEEpiC	esophagus:	n/a
45	chr15:75646105-75646155	HL-60	blood:	n/a
46	chr15:75646105-75646155	NB4	blood:	n/a
47	chr15:75646105-75646155	AG09319	gingival:	n/a
48	chr15:75646093-75646143	MCF-7	breast:	n/a
49	chr15:75646105-75646155	HRE	kidney:	n/a
50	chr15:75646093-75646143	HepG2	liver:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COMMD4-1	chr15:75645495-75646207	NONHSAT047324

No data

Variant related genes	Relation type
MIR631	TF binding region
NEIL1	TF binding region
NEIL1	CpG island
MIR631	CpG island

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3803467	1.00[CHB][hapmap]
rs5745934	1.00[CHB][hapmap]
rs60213317	1.00[AFR][1000 genomes]
rs73436829	1.00[AFR][1000 genomes]
rs73436831	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv482859	chr15:75493899-75688451	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv1035829	chr15:75504534-75692417	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
6	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
7	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
8	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
9	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75641200-75646800	Weak transcription	Aorta	Aorta
2	chr15:75641200-75655000	Weak transcription	K562	blood
3	chr15:75641400-75646800	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:75641400-75646800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:75641400-75647200	Weak transcription	Brain Anterior Caudate	brain
6	chr15:75641400-75647400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:75641400-75647400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:75641400-75647800	Weak transcription	Ovary	ovary
9	chr15:75641400-75648200	Weak transcription	Psoas Muscle	Psoas
10	chr15:75641400-75651200	Weak transcription	HSMM	muscle
11	chr15:75641400-75655400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:75641400-75658600	Weak transcription	HUVEC	blood vessel
13	chr15:75641600-75647000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:75641600-75647200	Weak transcription	Brain Angular Gyrus	brain
15	chr15:75641600-75647200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:75641600-75647400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr15:75641600-75647400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:75641600-75647800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:75641600-75648200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:75641600-75648400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:75641600-75648400	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:75641600-75648400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:75641600-75648800	Weak transcription	Fetal Lung	lung
24	chr15:75641600-75650400	Weak transcription	Brain Substantia Nigra	brain
25	chr15:75641600-75654200	Weak transcription	Small Intestine	intestine
26	chr15:75641600-75659200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:75641600-75659600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr15:75641800-75646200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:75641800-75646200	Weak transcription	NHEK	skin
30	chr15:75641800-75646600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:75641800-75647200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:75641800-75647400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr15:75641800-75647400	Weak transcription	Hela-S3	cervix
34	chr15:75641800-75648200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:75641800-75648800	Weak transcription	HMEC	breast
36	chr15:75641800-75651400	Weak transcription	Stomach Mucosa	stomach
37	chr15:75641800-75659600	Weak transcription	Fetal Heart	heart
38	chr15:75642000-75659600	Strong transcription	Fetal Intestine Small	intestine
39	chr15:75642200-75659800	Weak transcription	Fetal Brain Male	brain
40	chr15:75642400-75649000	Weak transcription	Osteobl	bone
41	chr15:75642400-75659800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:75642600-75646200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr15:75642600-75648600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:75642800-75646800	Weak transcription	Fetal Brain Female	brain
45	chr15:75642800-75646800	Weak transcription	Left Ventricle	heart
46	chr15:75642800-75647000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:75642800-75650400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr15:75642800-75654000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:75643000-75646800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:75643000-75646800	Weak transcription	Monocytes-CD14+_RO01746	blood

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