Variant report

Variant	rs574599849
Chromosome Location	chr6:33780254-33780255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33776830..33783261-chr6:33784291..33788356,6	K562	blood:
2	chr6:33755737..33758924-chr6:33778895..33782312,4	MCF-7	breast:
3	chr6:33779857..33781549-chr6:33791871..33794080,2	MCF-7	breast:
4	chr6:33771896..33773520-chr6:33777733..33780554,2	MCF-7	breast:
5	chr6:33778466..33781199-chr6:33784489..33787096,2	MCF-7	breast:
6	chr6:33771474..33774774-chr6:33778301..33780699,4	K562	blood:
7	chr6:33770698..33776163-chr6:33776764..33781728,7	K562	blood:
8	chr6:33779507..33781468-chr6:33784966..33787007,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000096395	Chromatin interaction
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885773	chr6:33778964-33813043	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33776400-33792400	Weak transcription	Right Atrium	heart
2	chr6:33778400-33781000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:33778400-33782400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:33778600-33780600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr6:33778600-33781800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:33778600-33784000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:33778800-33780600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr6:33778800-33781800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:33778800-33782200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:33778800-33782200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:33778800-33782800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:33779400-33780600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:33779400-33782200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:33779800-33780400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:33779800-33780600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr6:33779800-33782200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:33780000-33780600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr6:33780200-33780400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr6:33780200-33780400	Bivalent Enhancer	Fetal Brain Female	brain
20	chr6:33780200-33780600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr6:33780200-33780600	Bivalent Enhancer	Brain Germinal Matrix	brain
22	chr6:33780200-33781200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr6:33780200-33781600	Bivalent Enhancer	Fetal Brain Male	brain

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