Variant report

Variant	rs574611540
Chromosome Location	chr5:177783745-177783746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
4	nsv1021981	chr5:177620372-177825272	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
5	nsv537967	chr5:177620372-177825272	Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
6	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv883206	chr5:177684682-177796121	Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1027165	chr5:177693601-177843314	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv427739	chr5:177766033-177966666	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv883210	chr5:177771925-177980792	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	esv3327480	chr5:177782846-177787744	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177782200-177784200	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr5:177782600-177784600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr5:177782800-177784800	Enhancers	Fetal Lung	lung
4	chr5:177783000-177784200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:177783000-177784200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:177783000-177784400	Flanking Active TSS	Brain Substantia Nigra	brain
7	chr5:177783000-177784400	Enhancers	Lung	lung
8	chr5:177783000-177784400	Enhancers	Pancreas	Pancrea
9	chr5:177783000-177784400	Enhancers	Spleen	Spleen
10	chr5:177783000-177784600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:177783000-177784600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:177783000-177784600	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr5:177783000-177784800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:177783000-177785200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:177783000-177785600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:177783000-177785600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:177783200-177783800	Enhancers	HSMMtube	muscle
18	chr5:177783200-177784000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:177783200-177784000	Enhancers	Colon Smooth Muscle	Colon
20	chr5:177783200-177784200	Enhancers	Liver	Liver
21	chr5:177783200-177784200	Flanking Active TSS	Brain Angular Gyrus	brain
22	chr5:177783200-177784200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
23	chr5:177783200-177784400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
24	chr5:177783200-177784400	Enhancers	Gastric	stomach
25	chr5:177783200-177784600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:177783200-177784600	Enhancers	Fetal Thymus	thymus
27	chr5:177783200-177784800	Enhancers	Fetal Kidney	kidney
28	chr5:177783400-177783800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr5:177783400-177783800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:177783400-177783800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr5:177783400-177784000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr5:177783400-177784000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:177783400-177784000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:177783400-177784000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
35	chr5:177783400-177784000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
36	chr5:177783400-177784000	Enhancers	Ovary	ovary
37	chr5:177783400-177784200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr5:177783400-177784200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr5:177783400-177784200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr5:177783400-177784200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr5:177783400-177784200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
42	chr5:177783400-177784200	Bivalent Enhancer	Adipose Nuclei	Adipose
43	chr5:177783400-177784200	Flanking Active TSS	Brain Anterior Caudate	brain
44	chr5:177783400-177784200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:177783400-177784400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr5:177783400-177784400	Enhancers	Primary T cells from cord blood	blood
47	chr5:177783400-177784400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
48	chr5:177783400-177784400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr5:177783400-177784400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr5:177783400-177784400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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