Variant report

Variant	rs574614876
Chromosome Location	chr14:31889338-31889339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr14:31888807-31890235	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr14:31889170-31890316	GM12892	blood:	n/a	n/a
3	E2F6	chr14:31889155-31889347	K562	blood:	n/a	n/a
4	HDAC2	chr14:31888846-31890344	HepG2	liver:	n/a	chr14:31889103-31889112
5	SIN3AK20	chr14:31889230-31890120	PANC-1	pancreas:	n/a	n/a
6	POLR2A	chr14:31889248-31890336	HL-60	blood:	n/a	n/a
7	RCOR1	chr14:31889104-31890333	HepG2	liver:	n/a	n/a
8	TCF7L2	chr14:31889177-31890059	HCT-116	colon:	n/a	n/a
9	POLR2A	chr14:31889176-31890375	GM18505	blood:	n/a	n/a
10	CHD1	chr14:31889224-31890193	GM12878	blood:	n/a	chr14:31889629-31889639
11	POLR2A	chr14:31889061-31890271	K562	blood:	n/a	n/a
12	TAF1	chr14:31889251-31890045	MCF-7	breast:	n/a	n/a
13	FOSL2	chr14:31888956-31890290	HepG2	liver:	n/a	n/a
14	POLR2A	chr14:31889084-31890370	MCF10A-Er-Src	breast:	n/a	n/a
15	ZBTB7A	chr14:31889131-31889816	K562	blood:	n/a	chr14:31889539-31889550
16	ZNF143	chr14:31888734-31890363	Hela-S3	cervix:	n/a	chr14:31889870-31889880 chr14:31889763-31889773
17	MAX	chr14:31889067-31890198	MCF-7	breast:	n/a	chr14:31889804-31889813 chr14:31889792-31889802
18	CHD2	chr14:31889120-31890331	GM12878	blood:	n/a	chr14:31889629-31889639
19	RAD21	chr14:31888987-31890284	HepG2	liver:	n/a	chr14:31889324-31889338
20	MAX	chr14:31889272-31890137	H1-hESC	embryonic stem cell:	n/a	chr14:31889804-31889813 chr14:31889792-31889802
21	MYC	chr14:31889335-31889340	MCF-7	breast:	n/a	n/a
22	POLR2A	chr14:31889121-31890259	GM18951	blood:	n/a	n/a
23	POLR2A	chr14:31889164-31890327	GM15510	blood:	n/a	n/a
24	ELF1	chr14:31889068-31890161	GM12878	blood:	n/a	chr14:31889763-31889772 chr14:31889766-31889775
25	CCNT2	chr14:31889034-31890093	K562	blood:	n/a	n/a
26	POLR2A	chr14:31889084-31890236	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr14:31888998-31890143	HUVEC	blood vessel:	n/a	n/a
28	ZBTB7A	chr14:31889192-31889997	ECC-1	luminal epithelium:	n/a	chr14:31889539-31889550
29	HCFC1	chr14:31888131-31890973	Hela-S3	cervix:	n/a	n/a
30	NR2C2	chr14:31889251-31890215	HepG2	liver:	n/a	n/a
31	POLR2A	chr14:31889215-31890252	GM12878	blood:	n/a	n/a
32	NFYA	chr14:31889323-31889980	Hela-S3	cervix:	n/a	n/a
33	ETS1	chr14:31889093-31889400	K562	blood:	n/a	n/a
34	EP300	chr14:31889181-31890375	HepG2	liver:	n/a	chr14:31889325-31889341 chr14:31889765-31889774 chr14:31889253-31889269 chr14:31889763-31889772 chr14:31889870-31889886 chr14:31889254-31889270 chr14:31889871-31889887
35	POLR2A	chr14:31888991-31890339	HepG2	liver:	n/a	n/a
36	POLR2A	chr14:31889255-31890123	H1-hESC	embryonic stem cell:	n/a	n/a
37	POLR2A	chr14:31889299-31890249	SK-N-MC	brain:	n/a	n/a
38	POLR2A	chr14:31888988-31890246	HUVEC	blood vessel:	n/a	n/a
39	RAD21	chr14:31888926-31889428	Hela-S3	cervix:	n/a	chr14:31889324-31889338
40	POLR2A	chr14:31889204-31890148	MCF-7	breast:	n/a	n/a
41	POLR2A	chr14:31888876-31890329	Hela-S3	cervix:	n/a	n/a
42	MXI1	chr14:31888926-31890479	GM12878	blood:	n/a	n/a
43	ZEB1	chr14:31889038-31889990	GM12878	blood:	n/a	n/a
44	E2F1	chr14:31889103-31890087	Hela-S3	cervix:	n/a	chr14:31889764-31889774
45	SMC3	chr14:31889050-31890356	HepG2	liver:	n/a	chr14:31889213-31889223
46	MYC	chr14:31889200-31889397	HepG2	liver:	n/a	n/a
47	TCF12	chr14:31889094-31890278	A549	lung:	n/a	chr14:31889901-31889908 chr14:31889899-31889906
48	TCF12	chr14:31888984-31890303	ECC-1	luminal epithelium:	n/a	chr14:31889901-31889908 chr14:31889899-31889906
49	MAX	chr14:31889005-31890167	ECC-1	luminal epithelium:	n/a	chr14:31889804-31889813 chr14:31889792-31889802
50	HEY1	chr14:31888878-31890863	HepG2	liver:	n/a	chr14:31889322-31889337 chr14:31889202-31889217 chr14:31889200-31889215

No.	Distal block	Cell Line	Cell type
1	chr14:31887818..31891601-chr14:31923594..31927929,15	K562	blood:
2	chr14:31889308..31890174-chr6:31795417..31795943,2	Hela-S3	cervix:
3	chr13:37574206..37574708-chr14:31889229..31890178,2	Hela-S3	cervix:
4	chr14:31090018..31093014-chr14:31887951..31890191,2	MCF-7	breast:
5	chr14:31675912..31678861-chr14:31887661..31889789,2	K562	blood:
6	chr14:31887046..31892106-chr14:31923824..31928892,9	K562	blood:
7	chr14:31888742..31889382-chr3:41241031..41241649,2	Hela-S3	cervix:
8	chr14:31854067..31858154-chr14:31887468..31890013,3	MCF-7	breast:
9	chr14:31676619..31677277-chr14:31889333..31889964,2	K562	blood:
10	chr14:31676274..31678860-chr14:31889133..31891124,4	MCF-7	breast:
11	chr14:31675912..31678861-chr14:31887650..31889789,3	K562	blood:

Variant related genes	Relation type
ENSG00000250365	TF binding region
ENSG00000203546	Chromatin interaction
ENSG00000092148	Chromatin interaction
ENSG00000129480	Chromatin interaction
ENSG00000204388	Chromatin interaction
ENSG00000120697	Chromatin interaction
ENSG00000168036	Chromatin interaction
ENSG00000129493	Chromatin interaction
ENSG00000092108	Chromatin interaction
ENSG00000120699	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1042776	chr14:31844026-32003929	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv542019	chr14:31844026-32003929	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31887200-31890000	Active TSS	Hela-S3	cervix
2	chr14:31887400-31890000	Active TSS	NHLF	lung
3	chr14:31887600-31890600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:31887800-31890000	Active TSS	A549	lung
5	chr14:31887800-31890200	Active TSS	Right Atrium	heart
6	chr14:31888000-31890000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:31888000-31890000	Active TSS	NHDF-Ad	bronchial
8	chr14:31888200-31889600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:31888200-31890000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:31888200-31890000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:31888200-31890000	Active TSS	Fetal Lung	lung
12	chr14:31888200-31890000	Active TSS	HMEC	breast
13	chr14:31888200-31890200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:31888200-31890200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:31888200-31890200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:31888200-31890200	Active TSS	HSMMtube	muscle
17	chr14:31888200-31890400	Active TSS	H1 Cell Line	embryonic stem cell
18	chr14:31888200-31890400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:31888200-31890400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:31888200-31890400	Active TSS	Colonic Mucosa	Colon
21	chr14:31888200-31890400	Active TSS	Fetal Stomach	stomach
22	chr14:31888200-31890400	Active TSS	Stomach Smooth Muscle	stomach
23	chr14:31888200-31890400	Active TSS	K562	blood
24	chr14:31888200-31890600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:31888400-31890000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr14:31888400-31890000	Active TSS	Fetal Intestine Small	intestine
27	chr14:31888400-31890000	Active TSS	HSMM	muscle
28	chr14:31888400-31890200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr14:31888400-31890200	Active TSS	Right Ventricle	heart
30	chr14:31888400-31890400	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr14:31888400-31890400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr14:31888400-31890400	Active TSS	Fetal Intestine Large	intestine
33	chr14:31888400-31890400	Active TSS	Fetal Muscle Leg	muscle
34	chr14:31888400-31890400	Active TSS	Placenta	Placenta
35	chr14:31888400-31890400	Active TSS	Psoas Muscle	Psoas
36	chr14:31888400-31890400	Active TSS	NH-A	brain
37	chr14:31888400-31890400	Active TSS	Osteobl	bone
38	chr14:31888600-31889600	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr14:31888600-31890000	Active TSS	Muscle Satellite Cultured Cells	--
40	chr14:31888600-31890000	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr14:31888600-31890000	Active TSS	Duodenum Mucosa	Duodenum
42	chr14:31888600-31890000	Active TSS	Stomach Mucosa	stomach
43	chr14:31888600-31890000	Active TSS	GM12878-XiMat	blood
44	chr14:31888600-31890000	Active TSS	NHEK	skin
45	chr14:31888600-31890200	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr14:31888600-31890200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr14:31888600-31890200	Active TSS	Aorta	Aorta
48	chr14:31888600-31890200	Active TSS	Colon Smooth Muscle	Colon
49	chr14:31888600-31890200	Active TSS	Fetal Kidney	kidney
50	chr14:31888600-31890200	Active TSS	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links