Variant report

Variant	rs574630717
Chromosome Location	chr7:6865098-6865099
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr7:6865084-6865742	GM12878	blood:	n/a	n/a
2	MYBL2	chr7:6865095-6866233	HepG2	liver:	n/a	n/a
3	FOSL2	chr7:6864946-6866167	HepG2	liver:	n/a	n/a
4	POU2F2	chr7:6864949-6866234	GM12878	blood:	n/a	n/a
5	POLR2A	chr7:6865053-6866659	GM12892	blood:	n/a	n/a
6	CBX3	chr7:6864785-6865473	K562	blood:	n/a	n/a
7	POLR2A	chr7:6865063-6866179	Hela-S3	cervix:	n/a	n/a
8	SIN3AK20	chr7:6864943-6866262	SK-N-SH	brain:	n/a	n/a
9	POLR2A	chr7:6865004-6866259	Hela-S3	cervix:	n/a	n/a
10	POU2F2	chr7:6864837-6866508	GM12891	blood:	n/a	n/a
11	IRF4	chr7:6865038-6865382	GM12878	blood:	n/a	n/a
12	POLR2A	chr7:6864962-6866242	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chr7:6865096-6866307	GM12892	blood:	n/a	n/a
14	POLR2A	chr7:6865069-6866595	HepG2	liver:	n/a	n/a
15	SIN3AK20	chr7:6865078-6865379	SK-N-SH	brain:	n/a	n/a
16	JUND	chr7:6865008-6865291	HepG2	liver:	n/a	n/a
17	HEY1	chr7:6865062-6866285	HepG2	liver:	n/a	n/a
18	GABPA	chr7:6865019-6866427	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:6766860..6769459-chr7:6864426..6866111,2	MCF-7	breast:

Variant related genes	Relation type
CCZ1B	TF binding region
ENSG00000187953	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015277	chr7:6705439-7303195	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv887441	chr7:6744957-6919214	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv887446	chr7:6758018-6870635	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv887449	chr7:6764583-6870635	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2757207	chr7:6764583-6977214	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	esv2759504	chr7:6764583-6977214	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv887450	chr7:6779270-6919214	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv887451	chr7:6779270-6985071	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv887452	chr7:6791749-6919214	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv887453	chr7:6803267-6919214	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv887454	chr7:6805437-6919214	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv887455	chr7:6820508-6960802	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv887456	chr7:6820508-6985071	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	nsv887457	chr7:6820508-7163442	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
15	nsv887458	chr7:6832265-6948647	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	nsv887459	chr7:6832265-6950761	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
17	nsv887460	chr7:6832265-6952350	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
18	nsv887461	chr7:6832265-7163442	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
19	esv2762647	chr7:6833877-6885538	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv981430	chr7:6849071-6893097	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
21	nsv1019159	chr7:6854098-6920268	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
22	nsv1033423	chr7:6854098-6932778	Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
23	nsv1017971	chr7:6854098-6968616	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
24	nsv1023478	chr7:6854098-7001595	Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv1022295	chr7:6854098-7171376	Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
26	nsv1021638	chr7:6854098-7188086	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
27	nsv1023133	chr7:6854098-7516700	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
28	nsv887462	chr7:6855510-6986809	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
29	nsv981625	chr7:6864047-6874561	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6833000-6865200	Weak transcription	Left Ventricle	heart
2	chr7:6833000-6865200	Weak transcription	Ovary	ovary
3	chr7:6833200-6865200	Weak transcription	Pancreas	Pancrea
4	chr7:6833600-6865200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:6834000-6866000	Weak transcription	Gastric	stomach
6	chr7:6840000-6865200	Weak transcription	Colonic Mucosa	Colon
7	chr7:6850400-6865200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:6850400-6866000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:6853200-6865200	Weak transcription	Esophagus	oesophagus
10	chr7:6853400-6865200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:6854400-6865200	Weak transcription	Fetal Kidney	kidney
12	chr7:6855200-6866000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:6857000-6866000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr7:6858000-6865200	Weak transcription	Thymus	Thymus
15	chr7:6858400-6865200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr7:6859200-6865800	Weak transcription	Stomach Mucosa	stomach
17	chr7:6861600-6865800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:6861800-6865200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr7:6861800-6865800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:6863000-6865200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:6863000-6865200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:6863200-6865200	Weak transcription	Placenta	Placenta
23	chr7:6863400-6865200	Weak transcription	Fetal Intestine Small	intestine
24	chr7:6864200-6866400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:6864400-6865200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr7:6864400-6865200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr7:6864400-6865200	Weak transcription	Brain Substantia Nigra	brain
28	chr7:6864400-6866400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr7:6864400-6866800	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr7:6864600-6865200	Enhancers	Primary B cells from peripheral blood	blood
31	chr7:6864600-6865200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr7:6864600-6865200	Enhancers	Colon Smooth Muscle	Colon
33	chr7:6864600-6865200	Enhancers	Fetal Intestine Large	intestine
34	chr7:6864600-6865200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr7:6864600-6865400	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr7:6864600-6865400	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr7:6864600-6866000	Enhancers	Primary B cells from cord blood	blood
38	chr7:6864600-6866200	Active TSS	Placenta Amnion	Placenta Amnion
39	chr7:6864600-6866200	Active TSS	NHLF	lung
40	chr7:6864600-6866400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:6864600-6866400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr7:6864600-6866400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:6864600-6866400	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr7:6864600-6866800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:6864600-6866800	Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr7:6864600-6867000	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr7:6864800-6865200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr7:6864800-6865200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr7:6864800-6865200	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr7:6864800-6865200	Weak transcription	Liver	Liver

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