Variant report

Variant	rs574646779
Chromosome Location	chr12:41872937-41872938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2627708	chr12:41872658-41874071	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41869600-41905200	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41870800-41873000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:41871200-41873000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr12:41871200-41873000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:41871200-41873000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr12:41871200-41873200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr12:41871400-41873000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:41871400-41873000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr12:41872800-41874000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr12:41872800-41874400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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