Variant report

Variant	rs574659140
Chromosome Location	chr11:36025472-36025473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36018420..36021051-chr11:36024028..36026341,2	K562	blood:

Variant related genes	Relation type
ENSG00000241228	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv554002	chr11:36025118-36052212	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36015400-36026000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr11:36017600-36026000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36018200-36025800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:36019200-36029000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:36020000-36027800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:36020200-36026000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:36022600-36029000	Weak transcription	A549	lung
8	chr11:36022600-36029800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:36024000-36028400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:36024200-36026000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:36024200-36026000	Weak transcription	Pancreas	Pancrea
12	chr11:36024200-36028000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:36024200-36028000	Weak transcription	Ovary	ovary
14	chr11:36024200-36030800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:36024400-36025800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:36024400-36026000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:36024400-36026000	Weak transcription	Spleen	Spleen
18	chr11:36024400-36030200	Weak transcription	HSMM	muscle
19	chr11:36024400-36031600	Weak transcription	Psoas Muscle	Psoas
20	chr11:36024400-36035600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:36024600-36025600	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:36024600-36025600	Enhancers	HSMMtube	muscle
23	chr11:36024800-36025800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:36024800-36025800	Weak transcription	Brain Substantia Nigra	brain
25	chr11:36024800-36026000	Weak transcription	Fetal Lung	lung
26	chr11:36024800-36027400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:36025000-36026000	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:36025000-36028000	Weak transcription	HUVEC	blood vessel
29	chr11:36025000-36028800	Weak transcription	Fetal Kidney	kidney
30	chr11:36025200-36025800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:36025200-36025800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:36025200-36025800	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:36025200-36026000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:36025200-36026800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:36025200-36027000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:36025400-36025600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:36025400-36026000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:36025400-36026600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:36025400-36026600	ZNF genes & repeats	Fetal Stomach	stomach

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