Variant report

Variant	rs57469346
Chromosome Location	chr15:41203535-41203536
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41195654..41197212-chr15:41203181..41205731,2	K562	blood:
2	chr15:41195521..41197212-chr15:41201966..41205731,3	K562	blood:
3	chr15:41203448..41205626-chr15:41209190..41211696,4	MCF-7	breast:
4	chr15:41195189..41208751-chr15:41218816..41225232,20	MCF-7	breast:
5	chr15:41197462..41204234-chr15:41215803..41223321,13	K562	blood:
6	chr15:41194927..41205036-chr15:41218861..41227276,20	MCF-7	breast:
7	chr15:41198697..41200763-chr15:41203328..41205175,2	MCF-7	breast:
8	chr15:41193987..41204234-chr15:41215915..41223506,12	K562	blood:

No data

Variant related genes	Relation type
ENSG00000251161	Chromatin interaction
ENSG00000128917	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58860388	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7176001	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73400552	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74011899	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74011901	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8038706	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41197400-41205600	Enhancers	Lung	lung
2	chr15:41199200-41204600	Enhancers	Liver	Liver
3	chr15:41199400-41206400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:41199600-41203800	Weak transcription	Aorta	Aorta
5	chr15:41199600-41205000	Enhancers	Fetal Intestine Large	intestine
6	chr15:41199600-41205400	Enhancers	Fetal Muscle Leg	muscle
7	chr15:41199800-41204200	Enhancers	Fetal Intestine Small	intestine
8	chr15:41199800-41210000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr15:41200000-41204200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:41200000-41204200	Weak transcription	NHEK	skin
11	chr15:41200000-41204400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:41200000-41204800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:41200000-41209400	Weak transcription	Fetal Brain Female	brain
14	chr15:41200200-41203800	Enhancers	Adipose Nuclei	Adipose
15	chr15:41200200-41209800	Weak transcription	Right Ventricle	heart
16	chr15:41200400-41206600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr15:41200600-41206800	Weak transcription	Brain Germinal Matrix	brain
18	chr15:41201000-41203800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr15:41201000-41205200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr15:41201400-41204800	Enhancers	Fetal Stomach	stomach
21	chr15:41201600-41203600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr15:41201600-41204000	Enhancers	Primary hematopoietic stem cells	blood
23	chr15:41201600-41205000	Enhancers	Spleen	Spleen
24	chr15:41201800-41204000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:41201800-41205400	Enhancers	Placenta	Placenta
26	chr15:41202000-41204000	Enhancers	Fetal Lung	lung
27	chr15:41202200-41203800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:41202200-41203800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:41202200-41203800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:41202200-41204200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:41202200-41204200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr15:41202200-41205400	Enhancers	Fetal Thymus	thymus
33	chr15:41202200-41208000	Weak transcription	Pancreas	Pancrea
34	chr15:41202400-41203600	Weak transcription	Gastric	stomach
35	chr15:41202400-41203800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:41202400-41203800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:41202400-41204800	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr15:41202400-41205400	Enhancers	GM12878-XiMat	blood
39	chr15:41202400-41210000	Weak transcription	Left Ventricle	heart
40	chr15:41202600-41203600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:41202600-41203600	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr15:41202600-41204200	Enhancers	Fetal Kidney	kidney
43	chr15:41202600-41207000	Weak transcription	Right Atrium	heart
44	chr15:41202800-41204000	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr15:41202800-41204600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:41203000-41203600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr15:41203000-41203800	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr15:41203000-41204600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:41203000-41205200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr15:41203000-41205200	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links