Variant report

Variant	rs574781339
Chromosome Location	chr7:3939402-3939403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3937855..3940563-chr7:3945183..3947294,2	MCF-7	breast:
2	chr7:3443032..3445719-chr7:3938528..3940389,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1019190	chr7:3896634-3943566	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1025497	chr7:3905444-4176032	Enhancers Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv538686	chr7:3905444-4176032	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv433014	chr7:3910039-4054769	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv518377	chr7:3939055-3978342	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3901200-3959600	Weak transcription	Pancreas	Pancrea
2	chr7:3906800-3949000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:3923000-3940000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:3935000-3940200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr7:3936800-3974200	Weak transcription	Aorta	Aorta
6	chr7:3937400-3940400	Weak transcription	Fetal Brain Male	brain
7	chr7:3937800-3943400	Weak transcription	Psoas Muscle	Psoas
8	chr7:3938800-3939600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:3938800-3941000	Enhancers	Fetal Muscle Leg	muscle
10	chr7:3939000-3939600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:3939000-3939600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr7:3939000-3939600	Enhancers	HSMM	muscle
13	chr7:3939200-3939600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:3939200-3939600	Enhancers	Brain Anterior Caudate	brain
15	chr7:3939200-3939600	Enhancers	Brain Hippocampus Middle	brain
16	chr7:3939200-3939600	Enhancers	Brain Substantia Nigra	brain
17	chr7:3939200-3939600	Enhancers	Placenta	Placenta
18	chr7:3939200-3939800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:3939200-3940200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr7:3939200-3940400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:3939200-3940400	Enhancers	Brain Cingulate Gyrus	brain
22	chr7:3939400-3939600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr7:3939400-3939600	Weak transcription	Spleen	Spleen

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