Variant report

Variant	rs574787689
Chromosome Location	chr4:6771772-6771773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6722286..6724198-chr4:6771696..6774583,2	K562	blood:
2	chr4:6769673..6773832-chr4:6782147..6785150,6	MCF-7	breast:
3	chr4:6771636..6774569-chr4:6777418..6780380,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170871	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461190	chr4:6755324-6833794	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv593525	chr4:6755324-6833794	Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1010710	chr4:6771456-6810920	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6763600-6773000	Enhancers	Fetal Thymus	thymus
2	chr4:6765600-6781400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:6765800-6773800	Weak transcription	Hela-S3	cervix
4	chr4:6767600-6773200	Enhancers	Fetal Intestine Small	intestine
5	chr4:6767800-6776200	Enhancers	Duodenum Mucosa	Duodenum
6	chr4:6768800-6772800	Enhancers	Fetal Intestine Large	intestine
7	chr4:6769200-6772000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr4:6769200-6772200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr4:6769200-6772400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr4:6769400-6771800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr4:6769600-6772000	Enhancers	Primary T cells from cord blood	blood
12	chr4:6769600-6772800	Weak transcription	Fetal Heart	heart
13	chr4:6769800-6772800	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr4:6769800-6775800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr4:6770000-6771800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr4:6770200-6771800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr4:6770200-6771800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:6770200-6772400	Weak transcription	Lung	lung
19	chr4:6770200-6777400	Enhancers	Placenta	Placenta
20	chr4:6770400-6772400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:6770400-6772600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:6770400-6772600	Weak transcription	Adipose Nuclei	Adipose
23	chr4:6770400-6772600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr4:6770600-6772200	Weak transcription	Esophagus	oesophagus
25	chr4:6770600-6772400	Weak transcription	Osteobl	bone
26	chr4:6770600-6772600	Weak transcription	Pancreas	Pancrea
27	chr4:6770600-6772800	Weak transcription	Fetal Muscle Leg	muscle
28	chr4:6770600-6774000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr4:6770600-6774200	Weak transcription	Brain Hippocampus Middle	brain
30	chr4:6770600-6774400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:6770600-6781400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr4:6770800-6771800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr4:6770800-6772400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:6770800-6772400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr4:6770800-6772600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:6770800-6772600	Weak transcription	NHDF-Ad	bronchial
37	chr4:6770800-6773400	Weak transcription	Aorta	Aorta
38	chr4:6770800-6773400	Enhancers	Colonic Mucosa	Colon
39	chr4:6770800-6773800	Weak transcription	Right Atrium	heart
40	chr4:6770800-6774200	Weak transcription	A549	lung
41	chr4:6770800-6774600	Weak transcription	Brain Substantia Nigra	brain
42	chr4:6770800-6778800	Weak transcription	K562	blood
43	chr4:6770800-6779400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr4:6771200-6772200	Weak transcription	HSMMtube	muscle
45	chr4:6771200-6775400	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr4:6771200-6775600	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr4:6771400-6772000	Weak transcription	Left Ventricle	heart
48	chr4:6771400-6772000	Weak transcription	HSMM	muscle
49	chr4:6771400-6772200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr4:6771400-6772200	Weak transcription	Right Ventricle	heart

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