Variant report

Variant	rs574799740
Chromosome Location	chr1:227444071-227444072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:227442920..227447581-chr1:227503938..227508329,6	K562	blood:
2	chr1:227441285..227444497-chr1:227452902..227455834,3	K562	blood:
3	chr1:227442920..227445120-chr1:227505112..227507012,2	K562	blood:

Variant related genes	Relation type
ENSG00000236636	Chromatin interaction
ENSG00000143776	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003656	chr1:227034700-227559665	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv535318	chr1:227034700-227559665	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv873242	chr1:227371906-227579344	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv549271	chr1:227411003-227581017	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv3489592	chr1:227443729-227450377	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3452712	chr1:227443929-227450027	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227414000-227459200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:227414200-227453800	Weak transcription	HSMM	muscle
3	chr1:227415800-227456800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:227425400-227445200	Weak transcription	Osteobl	bone
5	chr1:227431600-227486200	Weak transcription	NHDF-Ad	bronchial
6	chr1:227432000-227459200	Weak transcription	Fetal Lung	lung
7	chr1:227432200-227455400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:227432600-227448000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:227432800-227446000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:227432800-227455600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:227433000-227446000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:227433000-227446000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:227433000-227469000	Weak transcription	Aorta	Aorta
14	chr1:227433200-227452800	Weak transcription	Ovary	ovary
15	chr1:227434000-227444200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:227434000-227446800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:227434000-227447000	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:227434000-227453400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:227434200-227455400	Weak transcription	Left Ventricle	heart
20	chr1:227434200-227455400	Weak transcription	Right Ventricle	heart
21	chr1:227434200-227455800	Weak transcription	Adipose Nuclei	Adipose
22	chr1:227434400-227446000	Weak transcription	Brain Substantia Nigra	brain
23	chr1:227434600-227468800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:227434800-227458400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:227435000-227457000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr1:227435600-227453600	Weak transcription	Fetal Intestine Small	intestine
27	chr1:227438800-227448000	Weak transcription	Psoas Muscle	Psoas
28	chr1:227438800-227449400	Weak transcription	Right Atrium	heart
29	chr1:227440000-227456600	Weak transcription	HepG2	liver
30	chr1:227440200-227456800	Weak transcription	HUVEC	blood vessel
31	chr1:227441200-227450000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr1:227441800-227449600	Weak transcription	A549	lung
33	chr1:227441800-227452000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:227442400-227449600	Weak transcription	Brain Angular Gyrus	brain
35	chr1:227443200-227446800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr1:227443400-227445400	Weak transcription	K562	blood
37	chr1:227443400-227474000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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