Variant report

Variant	rs57479989
Chromosome Location	chr11:92756834-92756835
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:92741730..92744392-chr11:92756499..92758327,2	K562	blood:
2	chr11:92749584..92751637-chr11:92755686..92757340,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56721910	1.00[AMR][1000 genomes]
rs58932578	1.00[AMR][1000 genomes]
rs59960286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60844946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7106131	1.00[AMR][1000 genomes]
rs7110812	1.00[AMR][1000 genomes]
rs7127932	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048275	chr11:92719681-92795212	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv526546	chr11:92742186-92851178	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92754000-92764400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:92754200-92757400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:92754600-92758800	Weak transcription	Hela-S3	cervix
4	chr11:92754800-92757000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:92754800-92757200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:92754800-92757200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:92754800-92757200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:92754800-92757200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:92754800-92757200	Weak transcription	HMEC	breast
10	chr11:92754800-92757200	Weak transcription	HSMM	muscle
11	chr11:92754800-92757200	Weak transcription	NHDF-Ad	bronchial
12	chr11:92754800-92757400	Weak transcription	NHLF	lung
13	chr11:92754800-92757400	Weak transcription	Osteobl	bone
14	chr11:92754800-92758200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:92754800-92761600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:92754800-92762400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:92754800-92764200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:92754800-92764200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:92754800-92764200	Weak transcription	NH-A	brain
20	chr11:92755000-92757200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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