Variant report

Variant	rs574868062
Chromosome Location	chr4:7043607-7043608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:7043449-7043774	MCF10A-Er-Src	breast:	n/a	n/a
2	MXI1	chr4:7043334-7046881	SK-N-SH	brain:	n/a	n/a
3	MXI1	chr4:7043287-7045186	IMR90	lung:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6999677..7002587-chr4:7042055..7044238,2	K562	blood:
2	chr4:6987653..6990708-chr4:7043238..7045970,4	MCF-7	breast:
3	chr4:7041999..7051916-chr4:7066728..7075643,37	MCF-7	breast:
4	chr4:7042421..7051559-chr4:7062214..7072674,24	MCF-7	breast:
5	chr4:6711584..6713629-chr4:7043225..7044994,2	MCF-7	breast:
6	chr4:6909683..6913053-chr4:7043553..7046923,6	MCF-7	breast:
7	chr4:6999660..7002155-chr4:7043088..7045317,3	MCF-7	breast:

No data

Variant related genes	Relation type
TADA2B	TF binding region
ENSG00000132405	Chromatin interaction
ENSG00000109519	Chromatin interaction
ENSG00000178988	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv469847	chr4:7003525-7168441	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv878531	chr4:7006541-7129556	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv878532	chr4:7010504-7055603	Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv878533	chr4:7032180-7063524	Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv4217	chr4:7035512-7080230	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	nsv593548	chr4:7043099-7045945	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7013200-7044400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:7032800-7044000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:7033800-7043800	Weak transcription	Small Intestine	intestine
4	chr4:7034400-7043800	Weak transcription	Dnd41	blood
5	chr4:7034400-7044000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:7034400-7044000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr4:7034600-7043800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr4:7035000-7043800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:7037000-7043800	Weak transcription	NHEK	skin
10	chr4:7040000-7044000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr4:7040200-7043800	Weak transcription	K562	blood
12	chr4:7042600-7044200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr4:7043000-7043800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr4:7043000-7043800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr4:7043000-7043800	Enhancers	Placenta	Placenta
16	chr4:7043000-7043800	Enhancers	Lung	lung
17	chr4:7043000-7043800	Enhancers	Pancreas	Pancrea
18	chr4:7043000-7043800	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr4:7043000-7043800	Enhancers	Stomach Mucosa	stomach
20	chr4:7043000-7043800	Enhancers	Spleen	Spleen
21	chr4:7043000-7044000	Enhancers	Primary T cells fromperipheralblood	blood
22	chr4:7043000-7044000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:7043200-7043800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
24	chr4:7043200-7043800	Enhancers	Fetal Heart	heart
25	chr4:7043200-7043800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr4:7043200-7044000	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr4:7043200-7044200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:7043200-7044200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:7043200-7044200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:7043200-7044200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr4:7043200-7044600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr4:7043200-7044600	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr4:7043400-7043800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
34	chr4:7043400-7043800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:7043400-7043800	Active TSS	Brain Substantia Nigra	brain
36	chr4:7043400-7043800	Flanking Active TSS	Colon Smooth Muscle	Colon
37	chr4:7043400-7043800	Bivalent Enhancer	Fetal Brain Female	brain
38	chr4:7043400-7043800	Enhancers	Ovary	ovary
39	chr4:7043400-7043800	Flanking Bivalent TSS/Enh	HepG2	liver
40	chr4:7043400-7044000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:7043400-7044000	Flanking Active TSS	Brain Angular Gyrus	brain
42	chr4:7043400-7044200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:7043400-7044200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:7043400-7044200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr4:7043400-7044200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr4:7043400-7044200	Flanking Active TSS	Colonic Mucosa	Colon
47	chr4:7043400-7044200	Flanking Active TSS	Duodenum Mucosa	Duodenum
48	chr4:7043400-7044200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr4:7043400-7044400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr4:7043400-7044400	Flanking Active TSS	Brain Hippocampus Middle	brain

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