Variant report

Variant	rs57489297
Chromosome Location	chr5:115687315-115687316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115685651..115688638-chr5:115690874..115693480,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57824805	0.92[AFR][1000 genomes]
rs59842929	1.00[AMR][1000 genomes]
rs73781056	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv882746	chr5:115566026-115704566	Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017983	chr5:115578765-115713688	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv869754	chr5:115634234-115696094	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv4968	chr5:115635771-115714856	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115649000-115692800	Weak transcription	Fetal Heart	heart
2	chr5:115680000-115693200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:115680600-115695800	Weak transcription	Ovary	ovary
4	chr5:115683200-115689000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr5:115684400-115694400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:115684400-115705800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:115684600-115687600	Weak transcription	Pancreas	Pancrea
8	chr5:115684600-115690200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:115684800-115688600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr5:115684800-115697800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr5:115685000-115687400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:115685000-115721400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr5:115685200-115689000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr5:115685200-115690000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:115685200-115696800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr5:115686400-115692000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:115686400-115697000	Weak transcription	Fetal Lung	lung
18	chr5:115686600-115693800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr5:115686600-115697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:115686800-115689200	Strong transcription	Left Ventricle	heart
21	chr5:115686800-115690000	Strong transcription	Primary T cells from cord blood	blood
22	chr5:115687000-115687600	Weak transcription	Primary B cells from cord blood	blood
23	chr5:115687000-115688000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr5:115687000-115688800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:115687200-115688000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:115687200-115693400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:115687200-115706400	Weak transcription	Liver	Liver

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