Variant report

Variant	rs574910945
Chromosome Location	chr7:56637084-56637085
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr7:56636984-56637151	K562	blood:	n/a	n/a
2	POLR2A	chr7:56637003-56637202	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr7:56636860-56637121	MCF-7	breast:	n/a	n/a
4	TAF1	chr7:56636910-56637219	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr7:56637035-56637135	GM12878	blood:	n/a	n/a
6	GATA3	chr7:56636781-56637166	T-47D	breast:	n/a	n/a
7	TAF1	chr7:56637006-56637156	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr7:56637054-56637101	A549	lung:	n/a	n/a
9	REST	chr7:56637017-56637152	PFSK-1	brain:	n/a	n/a
10	POLR2A	chr7:56636996-56637117	K562	blood:	n/a	n/a
11	POLR2A	chr7:56637021-56637144	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr7:56637019-56637095	GM12891	blood:	n/a	n/a
13	POLR2A	chr7:56637002-56637167	GM12891	blood:	n/a	n/a
14	POLR2A	chr7:56637081-56637121	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr7:56636854-56637122	MCF-7	breast:	n/a	n/a
16	TAF1	chr7:56637003-56637155	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr7:56636679-56637095	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr7:56637015-56637142	H1-hESC	embryonic stem cell:	n/a	n/a
19	MYC	chr7:56636955-56637118	MCF-7	breast:	n/a	chr7:56637106-56637115
20	POLR2A	chr7:56637023-56637095	H1-hESC	embryonic stem cell:	n/a	n/a
21	HEY1	chr7:56636861-56637173	HepG2	liver:	n/a	n/a
22	POLR2A	chr7:56636903-56637147	GM12878	blood:	n/a	n/a
23	POLR2A	chr7:56637018-56637145	A549	lung:	n/a	n/a
24	POLR2A	chr7:56636918-56637159	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr7:56636926-56637114	A549	lung:	n/a	n/a
26	POLR2A	chr7:56636860-56637201	GM12892	blood:	n/a	n/a
27	POLR2A	chr7:56637028-56637127	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000213650	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016771	chr7:56174828-56643856	Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv538862	chr7:56174828-56643856	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1033163	chr7:56307057-56677865	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv538863	chr7:56307057-56677865	ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv427783	chr7:56334626-56983646	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
6	nsv1022563	chr7:56383876-57318888	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
7	nsv1016255	chr7:56453095-56835595	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv888066	chr7:56466740-56693762	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1028678	chr7:56511649-56795206	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv538864	chr7:56511649-56795206	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv1020833	chr7:56511848-57323499	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
12	nsv538865	chr7:56511848-57323499	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
13	nsv8090	chr7:56511877-56772523	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
14	nsv1017561	chr7:56512618-57334136	Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
15	nsv831009	chr7:56566629-56754313	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
16	nsv1030968	chr7:56610656-56835595	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
17	nsv981480	chr7:56634980-56638588	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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