Variant report

Variant	rs5749150
Chromosome Location	chr22:31061152-31061153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31059169..31061820-chr22:31062802..31064446,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167065	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs5753268	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67153574	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv834175	chr22:30976624-31089545	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5749150	DUSP18	cis	brain	BrainEAC

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31045200-31062800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr22:31045400-31062800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr22:31045400-31062800	Weak transcription	NH-A	brain
4	chr22:31045600-31062800	Weak transcription	HSMMtube	muscle
5	chr22:31045800-31061400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr22:31045800-31062200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr22:31046000-31062000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr22:31046000-31062200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr22:31046000-31062600	Weak transcription	HMEC	breast
10	chr22:31046000-31062600	Weak transcription	NHLF	lung
11	chr22:31046800-31062000	Weak transcription	Stomach Mucosa	stomach
12	chr22:31047000-31063000	Weak transcription	Placenta	Placenta
13	chr22:31047000-31063000	Weak transcription	Psoas Muscle	Psoas
14	chr22:31051000-31061600	Weak transcription	Small Intestine	intestine
15	chr22:31052800-31061400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr22:31052800-31061600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr22:31052800-31062600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr22:31052800-31062800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr22:31052800-31063000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr22:31053000-31062800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr22:31053400-31062800	Weak transcription	HSMM	muscle
22	chr22:31054600-31061200	Strong transcription	Primary T cells from cord blood	blood
23	chr22:31054600-31062000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr22:31054800-31063000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr22:31055600-31061200	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr22:31056200-31061200	Strong transcription	Fetal Intestine Small	intestine
27	chr22:31057400-31061400	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr22:31057600-31061200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr22:31057600-31061400	Strong transcription	NHDF-Ad	bronchial
30	chr22:31057600-31061600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr22:31057800-31061400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr22:31058400-31062800	Weak transcription	Brain Angular Gyrus	brain
33	chr22:31058800-31062800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr22:31059000-31062600	Weak transcription	GM12878-XiMat	blood
35	chr22:31059200-31062600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr22:31059600-31061600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr22:31059600-31062600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr22:31059600-31062800	Weak transcription	Fetal Thymus	thymus
39	chr22:31059800-31061600	Weak transcription	NHEK	skin
40	chr22:31059800-31062600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr22:31059800-31062600	Weak transcription	Fetal Lung	lung
42	chr22:31059800-31062800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr22:31059800-31063000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr22:31059800-31063000	Weak transcription	Esophagus	oesophagus
45	chr22:31059800-31063000	Weak transcription	Left Ventricle	heart
46	chr22:31060000-31061400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr22:31060000-31061400	Weak transcription	Fetal Intestine Large	intestine
48	chr22:31060000-31061600	Weak transcription	Colon Smooth Muscle	Colon
49	chr22:31060000-31062000	Weak transcription	Primary B cells from cord blood	blood
50	chr22:31060000-31062000	Weak transcription	Rectal Smooth Muscle	rectum

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