Variant report

Variant	rs574935194
Chromosome Location	chr8:130981771-130981772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130981588..130985969-chr8:131027661..131030801,4	K562	blood:
2	chr8:130981588..130985969-chr8:131024671..131030870,8	K562	blood:
3	chr8:130963955..130966342-chr8:130980266..130982031,2	K562	blood:
4	chr8:130974580..130976381-chr8:130980211..130982416,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153310	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018045	chr8:130863644-131122644	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv612231	chr8:130868212-131132592	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv524349	chr8:130868363-131132592	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1021229	chr8:130887132-131057897	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1017292	chr8:130887132-131107258	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv465808	chr8:130963259-131118658	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv612232	chr8:130963259-131118658	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv398482	chr8:130981278-130982674	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130953400-130982000	Weak transcription	Hela-S3	cervix
2	chr8:130959200-130982200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:130959200-130983400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr8:130965800-130983800	Weak transcription	HSMMtube	muscle
5	chr8:130966000-130984400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:130966000-130984800	Weak transcription	Esophagus	oesophagus
7	chr8:130970400-130984800	Weak transcription	Fetal Heart	heart
8	chr8:130971600-130982000	Weak transcription	K562	blood
9	chr8:130971600-130984800	Weak transcription	Colonic Mucosa	Colon
10	chr8:130971600-130985400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:130972600-130983000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:130974200-130982000	Weak transcription	NHEK	skin
13	chr8:130974200-130982400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr8:130974600-130983000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr8:130975200-130983400	Weak transcription	HSMM	muscle
16	chr8:130975200-130985600	Weak transcription	Liver	Liver
17	chr8:130975400-130981800	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr8:130975400-130982000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:130975400-130982400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr8:130975400-130982600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr8:130975600-130983000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr8:130975600-130983800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr8:130975800-130983800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr8:130975800-130984800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr8:130975800-130984800	Weak transcription	Lung	lung
26	chr8:130975800-130985000	Weak transcription	Gastric	stomach
27	chr8:130975800-130994000	Weak transcription	Pancreas	Pancrea
28	chr8:130976000-130983800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr8:130976000-130983800	Weak transcription	Brain Anterior Caudate	brain
30	chr8:130976000-130983800	Weak transcription	Fetal Kidney	kidney
31	chr8:130976000-130983800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr8:130976000-130988000	Weak transcription	Psoas Muscle	Psoas
33	chr8:130976400-130983000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:130976800-130983400	Weak transcription	Brain Hippocampus Middle	brain
35	chr8:130976800-130983800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr8:130977400-130981800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr8:130977400-130983800	Weak transcription	Spleen	Spleen
38	chr8:130977400-130984000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr8:130977600-130981800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:130977600-130983000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr8:130977600-130983800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr8:130977600-130983800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr8:130978000-130984400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr8:130978400-130983000	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr8:130978600-130983800	Weak transcription	Thymus	Thymus
46	chr8:130978600-130983800	Weak transcription	NH-A	brain
47	chr8:130978800-130982400	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr8:130978800-130983000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr8:130979400-130982600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr8:130979400-130982800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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