Variant report

Variant	rs574952186
Chromosome Location	chr19:51321228-51321229
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:51306219..51311443-chr19:51320268..51326410,9	MCF-7	breast:
2	chr19:51317914..51322870-chr19:51325257..51328084,4	MCF-7	breast:
3	chr19:51305829..51307927-chr19:51320436..51323745,3	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC010325.1-1	chr19:51321164-51321293	XLOC_013119
2	lnc-AC010325.1-1	chr19:51321164-51321293	XLOC_013119
3	lnc-AC010325.1-1	chr19:51321164-51321293	XLOC_013119
4	lnc-AC010325.1-1	chr19:51321164-51321293	XLOC_013119
5	lnc-AC010325.1-1	chr19:51321164-51321293	ENSG00000180279.5
6	lnc-AC010325.1-1	chr19:51321184-51321293	ENSG00000180279.5

No data

Variant related genes	Relation type
ENSG00000167747	Chromatin interaction
ENSG00000167748	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060760	chr19:50883425-51463712	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
2	nsv1058177	chr19:50984774-51463712	Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv912288	chr19:51283791-51334355	Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
4	nsv912289	chr19:51283791-51335943	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
5	nsv912290	chr19:51283791-51344483	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
6	nsv526232	chr19:51301230-51335943	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
7	nsv519121	chr19:51308092-51332670	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv516450	chr19:51321083-51322312	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv524637	chr19:51321083-51332670	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv523089	chr19:51321083-51336197	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51320600-51321400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
2	chr19:51320600-51321400	Enhancers	Pancreas	Pancrea
3	chr19:51320600-51322000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr19:51320800-51321400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr19:51320800-51321400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
6	chr19:51320800-51321400	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
7	chr19:51320800-51321400	Active TSS	GM12878-XiMat	blood
8	chr19:51320800-51321400	Bivalent Enhancer	Osteobl	bone
9	chr19:51320800-51321600	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr19:51320800-51338800	Weak transcription	Right Atrium	heart
11	chr19:51321000-51321400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:51321000-51321400	Enhancers	Primary B cells from cord blood	blood
13	chr19:51321000-51321400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr19:51321000-51321400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
15	chr19:51321000-51321400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
16	chr19:51321000-51321400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
17	chr19:51321000-51321400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr19:51321000-51321400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr19:51321000-51321800	Active TSS	H1 Cell Line	embryonic stem cell
20	chr19:51321000-51321800	Active TSS	H9 Cell Line	embryonic stem cell
21	chr19:51321000-51321800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr19:51321000-51322000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr19:51321000-51322000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr19:51321000-51322000	Flanking Active TSS	HMEC	breast
25	chr19:51321000-51322200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr19:51321000-51322200	Bivalent Enhancer	Spleen	Spleen
27	chr19:51321200-51321400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
28	chr19:51321200-51321400	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
29	chr19:51321200-51321400	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr19:51321200-51321400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr19:51321200-51321400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr19:51321200-51321400	Active TSS	NHEK	skin
33	chr19:51321200-51321600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr19:51321200-51321600	Bivalent/Poised TSS	Colonic Mucosa	Colon
35	chr19:51321200-51321600	Flanking Bivalent TSS/Enh	Sigmoid Colon	Sigmoid Colon
36	chr19:51321200-51321600	Active TSS	K562	blood
37	chr19:51321200-51321800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr19:51321200-51321800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr19:51321200-51321800	Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr19:51321200-51321800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
41	chr19:51321200-51321800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr19:51321200-51321800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr19:51321200-51321800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr19:51321200-51321800	Flanking Active TSS	Primary B cells from peripheral blood	blood
45	chr19:51321200-51321800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr19:51321200-51321800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr19:51321200-51321800	Active TSS	A549	lung
48	chr19:51321200-51322000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
49	chr19:51321200-51322000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr19:51321200-51322000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin

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