Variant report

Variant	rs574952652
Chromosome Location	chr6:35888227-35888228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:27324243..27326637-chr6:35887924..35890289,2	MCF-7	breast:
2	chr15:68570051..68570582-chr6:35887669..35888429,2	Hela-S3	cervix:
3	chr6:35886849..35889245-chr6:35993978..35995751,2	MCF-7	breast:
4	chr3:171528194..171528717-chr6:35888092..35888997,2	NB4	blood:
5	chr6:35888094..35890859-chr6:36167243..36169952,2	K562	blood:
6	chr6:35885785..35888471-chr6:35920108..35922574,2	K562	blood:
7	chr6:35838681..35841453-chr6:35887224..35888776,2	K562	blood:
8	chr6:35825264..35827531-chr6:35887069..35888745,2	K562	blood:
9	chr6:35887479..35890120-chr6:35993309..35995768,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000096063	Chromatin interaction
ENSG00000096070	Chromatin interaction
ENSG00000260657	Chromatin interaction
ENSG00000169018	Chromatin interaction
ENSG00000112062	Chromatin interaction
ENSG00000075651	Chromatin interaction
ENSG00000077238	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3403583	chr6:35887399-35889947	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35886000-35889200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:35886000-35889200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:35886000-35889800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:35886000-35890000	Active TSS	GM12878-XiMat	blood
5	chr6:35886200-35888400	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr6:35886200-35889400	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr6:35886200-35889600	Active TSS	Fetal Intestine Large	intestine
8	chr6:35886400-35888400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:35886400-35888400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:35886400-35888400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:35886400-35889400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:35886400-35889400	Active TSS	Brain Anterior Caudate	brain
13	chr6:35886400-35889600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:35886400-35889600	Active TSS	Brain Cingulate Gyrus	brain
15	chr6:35886400-35889600	Active TSS	HMEC	breast
16	chr6:35886400-35890400	Active TSS	A549	lung
17	chr6:35886600-35889000	Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr6:35886600-35889200	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr6:35886600-35889600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:35886800-35889200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:35886800-35889200	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr6:35886800-35889200	Active TSS	Fetal Intestine Small	intestine
23	chr6:35886800-35889400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr6:35886800-35889400	Active TSS	H1 Cell Line	embryonic stem cell
25	chr6:35886800-35889400	Active TSS	H9 Cell Line	embryonic stem cell
26	chr6:35886800-35889400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:35886800-35889400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:35886800-35889400	Active TSS	NHLF	lung
29	chr6:35887000-35888400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr6:35887000-35888400	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr6:35887000-35889000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:35887000-35889200	Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr6:35887000-35889200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:35887000-35889200	Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr6:35887000-35889200	Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr6:35887000-35889400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:35887000-35889400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:35887000-35889400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:35887000-35889400	Active TSS	Esophagus	oesophagus
40	chr6:35887000-35889400	Active TSS	HSMM	muscle
41	chr6:35887000-35890000	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr6:35887000-35890200	Active TSS	Hela-S3	cervix
43	chr6:35887200-35888400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
44	chr6:35887200-35888400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
45	chr6:35887200-35888400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr6:35887200-35889000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:35887200-35889200	Active TSS	Sigmoid Colon	Sigmoid Colon
48	chr6:35887200-35889200	Active TSS	NHDF-Ad	bronchial
49	chr6:35887200-35889600	Active TSS	Muscle Satellite Cultured Cells	--
50	chr6:35887200-35889800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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