Variant report

Variant	rs574965596
Chromosome Location	chr5:68672903-68672904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68663499..68666759-chr5:68669120..68673475,5	MCF-7	breast:
2	chr5:68669176..68671492-chr5:68672021..68673716,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152942	Chromatin interaction
ENSG00000085231	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881767	chr5:68625786-68733698	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3425236	chr5:68672546-68674544	Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68666200-68678000	Weak transcription	Spleen	Spleen
2	chr5:68666600-68677800	Weak transcription	Colonic Mucosa	Colon
3	chr5:68666600-68677800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:68666600-68681000	Weak transcription	Lung	lung
5	chr5:68666600-68689600	Weak transcription	Aorta	Aorta
6	chr5:68666600-68689800	Weak transcription	Gastric	stomach
7	chr5:68666600-68689800	Weak transcription	Right Ventricle	heart
8	chr5:68666600-68696200	Weak transcription	Pancreas	Pancrea
9	chr5:68666600-68705000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:68666600-68710800	Weak transcription	Esophagus	oesophagus
11	chr5:68666800-68676600	Weak transcription	Thymus	Thymus
12	chr5:68666800-68677800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:68666800-68677800	Weak transcription	Fetal Kidney	kidney
14	chr5:68666800-68710600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:68666800-68710600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:68666800-68710800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:68666800-68710800	Weak transcription	Psoas Muscle	Psoas
18	chr5:68667000-68673600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:68667000-68674400	Weak transcription	HMEC	breast
20	chr5:68667000-68677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:68667000-68684600	Weak transcription	Fetal Heart	heart
22	chr5:68667000-68690400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr5:68667200-68710400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr5:68667200-68710800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr5:68667800-68674200	Weak transcription	A549	lung
26	chr5:68667800-68677800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr5:68667800-68679600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr5:68667800-68710600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr5:68668000-68713000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:68668200-68673800	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:68668200-68674200	Weak transcription	Brain Anterior Caudate	brain
32	chr5:68668800-68683600	Weak transcription	Fetal Brain Male	brain
33	chr5:68668800-68712400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:68669200-68681800	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr5:68669400-68673200	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr5:68669600-68673000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:68669600-68673400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr5:68669600-68674800	Strong transcription	Placenta	Placenta
39	chr5:68669600-68674800	Strong transcription	Dnd41	blood
40	chr5:68669600-68675000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr5:68669600-68675000	Strong transcription	Osteobl	bone
42	chr5:68669600-68675200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr5:68669600-68697600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr5:68669600-68701200	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr5:68669600-68702200	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr5:68669600-68702800	Strong transcription	Liver	Liver
47	chr5:68669800-68674200	Strong transcription	NHEK	skin
48	chr5:68669800-68674800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr5:68669800-68676200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:68669800-68678400	Strong transcription	NHDF-Ad	bronchial

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