The 2.0 version of rSNPBase

Variant report

Variant rs5749659
Chromosome Location chr22:20832580-20832581
allele A/C/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:20801200-20848800 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr22:20806600-20837000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr22:20810600-20848800 Weak transcription NH-A brain
4 chr22:20811000-20848800 Weak transcription HSMM muscle
5 chr22:20811200-20840600 Weak transcription HSMMtube muscle
6 chr22:20811200-20842800 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr22:20818200-20835000 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr22:20819000-20846600 Weak transcription GM12878-XiMat blood
9 chr22:20820000-20839800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr22:20820000-20842600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr22:20820000-20845000 Weak transcription Thymus Thymus
12 chr22:20824000-20840600 Weak transcription Colon Smooth Muscle Colon
13 chr22:20824400-20836200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr22:20825400-20840600 Weak transcription Right Ventricle heart
15 chr22:20825600-20847600 Weak transcription Fetal Brain Male brain
16 chr22:20825800-20834000 Weak transcription Brain Hippocampus Middle brain
17 chr22:20825800-20834000 Weak transcription HepG2 liver
18 chr22:20825800-20842200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr22:20825800-20842800 Weak transcription Aorta Aorta
20 chr22:20825800-20843400 Weak transcription HUES6 Cell Line embryonic stem cell
21 chr22:20825800-20848400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr22:20825800-20848600 Weak transcription Muscle Satellite Cultured Cells --
23 chr22:20825800-20848600 Weak transcription Fetal Lung lung
24 chr22:20825800-20848600 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr22:20825800-20848600 Weak transcription NHDF-Ad bronchial
26 chr22:20825800-20848800 Weak transcription Rectal Smooth Muscle rectum
27 chr22:20825800-20849000 Weak transcription Brain Substantia Nigra brain
28 chr22:20825800-20849000 Weak transcription Fetal Kidney kidney
29 chr22:20825800-20849200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr22:20826000-20834000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr22:20826000-20834200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr22:20826000-20834200 Weak transcription Primary B cells from cord blood blood
33 chr22:20826000-20836600 Weak transcription Stomach Smooth Muscle stomach
34 chr22:20826000-20837000 Weak transcription Primary B cells from peripheral blood blood
35 chr22:20826000-20837200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
36 chr22:20826000-20837200 Weak transcription Gastric stomach
37 chr22:20826000-20837800 Weak transcription Brain Anterior Caudate brain
38 chr22:20826000-20841000 Weak transcription Skeletal Muscle Female skeletal muscle
39 chr22:20826000-20842000 Weak transcription Primary neutrophils fromperipheralblood blood
40 chr22:20826000-20842000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
41 chr22:20826000-20842000 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr22:20826000-20842200 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr22:20826000-20842400 Weak transcription Liver Liver
44 chr22:20826000-20842400 Weak transcription Left Ventricle heart
45 chr22:20826000-20848800 Weak transcription Brain Angular Gyrus brain
46 chr22:20826000-20848800 Weak transcription Duodenum Mucosa Duodenum
47 chr22:20826000-20849200 Weak transcription Esophagus oesophagus
48 chr22:20826200-20833400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr22:20826200-20833600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr22:20826200-20834200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015