Variant report

Variant	rs574967992
Chromosome Location	chr11:35010256-35010257
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv897215	chr11:35009233-35048359	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34952200-35010800	Weak transcription	Small Intestine	intestine
2	chr11:34959000-35019600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:34976600-35018400	Weak transcription	Spleen	Spleen
4	chr11:34982200-35014200	Weak transcription	Fetal Brain Male	brain
5	chr11:34983600-35018200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:34985200-35026600	Weak transcription	Colonic Mucosa	Colon
7	chr11:34987000-35017000	Weak transcription	K562	blood
8	chr11:34991000-35020800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:34992400-35016600	Weak transcription	Fetal Heart	heart
10	chr11:34997600-35019600	Weak transcription	Fetal Kidney	kidney
11	chr11:34999000-35018600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:35000600-35035000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:35000800-35010600	Weak transcription	Primary T cells from cord blood	blood
14	chr11:35000800-35013200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:35000800-35018200	Weak transcription	Brain Substantia Nigra	brain
16	chr11:35000800-35019600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:35000800-35019800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:35000800-35031000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:35001000-35014400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:35001000-35019600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:35001000-35019600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:35001000-35019600	Weak transcription	HMEC	breast
23	chr11:35001000-35021200	Weak transcription	Lung	lung
24	chr11:35001200-35019600	Weak transcription	NHEK	skin
25	chr11:35005600-35011200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:35005600-35011200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:35005800-35011600	Strong transcription	Adipose Nuclei	Adipose
28	chr11:35006400-35011800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:35006400-35016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:35006800-35019600	Weak transcription	HUVEC	blood vessel
31	chr11:35007000-35018600	Weak transcription	Thymus	Thymus
32	chr11:35007000-35019600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr11:35007000-35020600	Weak transcription	Placenta	Placenta
34	chr11:35007000-35026600	Weak transcription	Fetal Intestine Small	intestine
35	chr11:35007000-35028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:35007000-35029800	Weak transcription	Esophagus	oesophagus
37	chr11:35007200-35011000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:35007200-35017600	Weak transcription	Brain Anterior Caudate	brain
39	chr11:35007200-35018200	Weak transcription	Brain Angular Gyrus	brain
40	chr11:35007200-35035200	Weak transcription	Fetal Stomach	stomach
41	chr11:35007400-35010600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:35007400-35012600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr11:35007400-35014400	Weak transcription	Colon Smooth Muscle	Colon
44	chr11:35007400-35014800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:35007400-35015000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr11:35007400-35017400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:35007400-35019600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr11:35007400-35019600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:35007400-35026600	Weak transcription	Fetal Intestine Large	intestine
50	chr11:35007400-35026800	Weak transcription	Fetal Brain Female	brain

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