Variant report

Variant	rs575034145
Chromosome Location	chr6:71665288-71665289
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:71416313..71416967-chr6:71665219..71666338,4	MCF-7	breast:
2	chr6:71594169..71594842-chr6:71665262..71666233,2	MCF-7	breast:
3	chr6:71230031..71231237-chr6:71665008..71666316,7	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886148	chr6:71623253-71694742	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3339485	chr6:71665256-71667804	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71663400-71665800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
2	chr6:71663600-71667000	Active TSS	Brain Cingulate Gyrus	brain
3	chr6:71663800-71667200	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr6:71663800-71667600	Active TSS	Brain Anterior Caudate	brain
5	chr6:71664200-71667600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:71664600-71667000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
7	chr6:71664600-71667400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:71664800-71665400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:71664800-71665400	Bivalent Enhancer	Fetal Heart	heart
10	chr6:71664800-71665400	Bivalent Enhancer	Fetal Lung	lung
11	chr6:71664800-71666000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
12	chr6:71664800-71666800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
13	chr6:71664800-71667200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr6:71664800-71667400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:71664800-71667400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
16	chr6:71664800-71667800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr6:71665000-71665400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
18	chr6:71665000-71665400	Bivalent Enhancer	Fetal Brain Male	brain
19	chr6:71665000-71666200	Active TSS	H9 Cell Line	embryonic stem cell
20	chr6:71665000-71667000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr6:71665000-71667000	Active TSS	Fetal Brain Female	brain
22	chr6:71665000-71667400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:71665000-71667600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
24	chr6:71665000-71667600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
25	chr6:71665200-71665400	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:71665200-71665400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:71665200-71665400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:71665200-71665400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:71665200-71665400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:71665200-71665400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr6:71665200-71665400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
32	chr6:71665200-71665400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
33	chr6:71665200-71665400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr6:71665200-71665400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr6:71665200-71665400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:71665200-71665400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:71665200-71665400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:71665200-71665400	Flanking Active TSS	Aorta	Aorta
39	chr6:71665200-71665400	Flanking Active TSS	Brain Substantia Nigra	brain
40	chr6:71665200-71665400	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
41	chr6:71665200-71665400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
42	chr6:71665200-71665400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
43	chr6:71665200-71665400	Bivalent/Poised TSS	Fetal Kidney	kidney
44	chr6:71665200-71665400	Bivalent Enhancer	Placenta	Placenta
45	chr6:71665200-71665400	Enhancers	Lung	lung
46	chr6:71665200-71665400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
47	chr6:71665200-71665400	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
48	chr6:71665200-71665400	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
49	chr6:71665200-71665400	Bivalent Enhancer	Spleen	Spleen
50	chr6:71665200-71665400	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood

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