Variant report

Variant	rs57508459
Chromosome Location	chr18:8988412-8988413
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:8656651..8657422-chr18:8987942..8988820,2	MCF-7	breast:
2	chr18:8654390..8655746-chr18:8988013..8989122,6	MCF-7	breast:
3	chr18:8695528..8698349-chr18:8987290..8989538,2	MCF-7	breast:
4	chr18:8653968..8654862-chr18:8988163..8988970,3	MCF-7	breast:
5	chr18:8988063..8988947-chr18:9054783..9055892,5	MCF-7	breast:
6	chr18:8882653..8883340-chr18:8988162..8989026,2	K562	blood:
7	chr18:8696431..8697427-chr18:8987914..8988780,4	K562	blood:
8	chr18:8654145..8655107-chr18:8987974..8988486,3	K562	blood:
9	chr18:8696635..8697418-chr18:8987962..8988738,3	MCF-7	breast:
10	chr18:8979245..8982600-chr18:8987803..8990531,3	K562	blood:

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73384198	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8983200-8988800	Enhancers	Colon Smooth Muscle	Colon
2	chr18:8986200-8991200	Enhancers	K562	blood
3	chr18:8986800-8988600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr18:8986800-8988600	Enhancers	A549	lung
5	chr18:8986800-8989000	Enhancers	HMEC	breast
6	chr18:8986800-8992600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr18:8987000-8988600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr18:8987000-8988600	Enhancers	NH-A	brain
9	chr18:8987600-8988600	Weak transcription	GM12878-XiMat	blood
10	chr18:8987600-8990000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr18:8987800-8989400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr18:8987800-8990200	Weak transcription	HSMMtube	muscle
13	chr18:8987800-8990400	Weak transcription	Pancreas	Pancrea
14	chr18:8988000-8989800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr18:8988000-8990400	Weak transcription	HSMM	muscle
16	chr18:8988200-8989400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr18:8988200-8990600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr18:8988200-8991000	Weak transcription	Osteobl	bone
19	chr18:8988200-8991400	Enhancers	Liver	Liver
20	chr18:8988200-8994800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr18:8988400-8990000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr18:8988400-8990000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr18:8988400-8990000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr18:8988400-8990000	Weak transcription	NHDF-Ad	bronchial
25	chr18:8988400-8990400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr18:8988400-8990600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr18:8988400-8991000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links