Variant report

Variant	rs57511334
Chromosome Location	chr1:67630849-67630850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11465759	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11465771	1.00[EUR][1000 genomes]
rs11465785	1.00[EUR][1000 genomes]
rs72927014	0.86[AFR][1000 genomes]
rs72927017	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927024	1.00[EUR][1000 genomes]
rs72927042	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74080125	1.00[EUR][1000 genomes]
rs74080126	1.00[EUR][1000 genomes]
rs74082141	1.00[EUR][1000 genomes]
rs74082142	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv461762	chr1:67551209-67648460	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv546446	chr1:67551209-67648460	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67628600-67635200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:67628800-67635000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr1:67628800-67635600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr1:67629400-67632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:67630200-67631400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:67630800-67632200	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links