Variant report

Variant	rs575114958
Chromosome Location	chr9:27077253-27077254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv466334	chr9:27028947-27098940	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv613944	chr9:27028947-27098940	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3389158	chr9:27077102-27079300	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27024400-27082600	Weak transcription	Gastric	stomach
2	chr9:27024600-27078600	Weak transcription	Aorta	Aorta
3	chr9:27024600-27079000	Weak transcription	Pancreas	Pancrea
4	chr9:27024600-27082400	Weak transcription	Primary T cells from cord blood	blood
5	chr9:27024600-27083400	Weak transcription	Left Ventricle	heart
6	chr9:27024600-27085000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:27024600-27086800	Weak transcription	Right Ventricle	heart
8	chr9:27024800-27094800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:27025200-27078000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr9:27038000-27085000	Weak transcription	Brain Hippocampus Middle	brain
11	chr9:27053800-27086800	Weak transcription	HSMM	muscle
12	chr9:27055200-27087000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:27057400-27083000	Weak transcription	Liver	Liver
14	chr9:27060200-27085400	Weak transcription	Adipose Nuclei	Adipose
15	chr9:27062200-27081400	Weak transcription	Fetal Intestine Large	intestine
16	chr9:27067200-27081200	Weak transcription	Spleen	Spleen
17	chr9:27068000-27087400	Weak transcription	Lung	lung
18	chr9:27068200-27079400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:27070200-27080600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:27072200-27087000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr9:27073000-27086800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:27074000-27085400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:27074200-27085400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:27074600-27077600	Strong transcription	Fetal Stomach	stomach
25	chr9:27076600-27085400	Weak transcription	Ovary	ovary
26	chr9:27076800-27083000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:27076800-27087200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:27077000-27078800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:27077200-27080800	Weak transcription	Fetal Intestine Small	intestine

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