Variant report

Variant	rs575116805
Chromosome Location	chr9:26326541-26326542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:25963971..25964744-chr9:26326247..26327016,2	MCF-7	breast:
2	chr9:25964124..25964728-chr9:26326171..26327079,3	MCF-7	breast:
3	chr9:26326443..26327103-chr9:26862889..26863559,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033265	chr9:26242026-26425832	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv869744	chr9:26256188-26435849	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv430012	chr9:26257238-26395900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv430014	chr9:26265500-26435047	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752291	chr9:26265534-26395883	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1018547	chr9:26265534-26424759	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1027596	chr9:26265534-26425832	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1016727	chr9:26265534-26434482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv613933	chr9:26265879-26417858	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv613934	chr9:26265879-26423082	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv613935	chr9:26273322-26417858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv613936	chr9:26273358-26417858	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1020092	chr9:26283966-26407717	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv540102	chr9:26283966-26407717	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv892853	chr9:26326100-26457404	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26324200-26327200	Enhancers	Fetal Stomach	stomach
2	chr9:26324400-26326600	Enhancers	HSMM	muscle
3	chr9:26324600-26326600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr9:26324800-26326600	Enhancers	NHDF-Ad	bronchial
5	chr9:26325000-26327200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:26325400-26326600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:26325400-26326600	Enhancers	Fetal Lung	lung
8	chr9:26325400-26327200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:26325400-26329800	Weak transcription	Ovary	ovary
10	chr9:26325800-26326600	Enhancers	Brain Hippocampus Middle	brain
11	chr9:26325800-26327000	Enhancers	Hela-S3	cervix
12	chr9:26326200-26326600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:26326200-26326600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr9:26326200-26326600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr9:26326200-26326600	Enhancers	HUVEC	blood vessel
16	chr9:26326400-26326600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:26326400-26326600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:26326400-26326600	Enhancers	Adipose Nuclei	Adipose
19	chr9:26326400-26326600	Enhancers	Fetal Kidney	kidney
20	chr9:26326400-26326600	Enhancers	Rectal Smooth Muscle	rectum
21	chr9:26326400-26326600	Enhancers	HSMMtube	muscle

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