Variant report

Variant	rs57512445
Chromosome Location	chr14:31701673-31701674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10872850	0.87[AMR][1000 genomes]
rs12590463	0.81[EUR][1000 genomes]
rs12879409	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17097767	0.87[EUR][1000 genomes]
rs2378850	0.87[AMR][1000 genomes]
rs28816478	0.87[AMR][1000 genomes]
rs35304218	0.89[AMR][1000 genomes]
rs4587868	0.87[AMR][1000 genomes]
rs60151608	0.86[EUR][1000 genomes]
rs67736373	0.81[EUR][1000 genomes]
rs68018982	0.86[EUR][1000 genomes]
rs8015612	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31698600-31702600	Weak transcription	Fetal Heart	heart
2	chr14:31699400-31702800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:31699600-31701800	Enhancers	K562	blood
4	chr14:31699600-31703400	Weak transcription	Placenta	Placenta
5	chr14:31699600-31703800	Enhancers	HepG2	liver
6	chr14:31699600-31707600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:31700600-31702400	Enhancers	Stomach Mucosa	stomach
8	chr14:31701000-31701800	Enhancers	Fetal Intestine Large	intestine
9	chr14:31701000-31701800	Enhancers	Fetal Intestine Small	intestine
10	chr14:31701200-31701800	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr14:31701400-31701800	Enhancers	Hela-S3	cervix
12	chr14:31701600-31702400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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