Variant report

Variant	rs57517301
Chromosome Location	chr6:101878527-101878528
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs6918619	0.82[AFR][1000 genomes]
rs6938300	0.82[AFR][1000 genomes]
rs6939312	0.82[AFR][1000 genomes]
rs73502647	0.87[AFR][1000 genomes]
rs73502676	1.00[EUR][1000 genomes]
rs73502681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9498584	0.92[AFR][1000 genomes]
rs9498587	0.82[AFR][1000 genomes]
rs9498588	0.82[AFR][1000 genomes]
rs9498589	0.82[AFR][1000 genomes]
rs9498591	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101851000-101882000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:101864400-101882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:101870600-101882600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:101876600-101879200	Enhancers	Fetal Brain Male	brain
5	chr6:101877200-101883200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:101877400-101882400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:101878000-101882800	Weak transcription	Brain Anterior Caudate	brain
8	chr6:101878200-101878600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr6:101878200-101878800	Enhancers	Esophagus	oesophagus
10	chr6:101878200-101879200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:101878400-101878800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:101878400-101879000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:101878400-101879200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links