Variant report

Variant	rs57522012
Chromosome Location	chr1:209715639-209715640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58686302	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74157910	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209713600-209722600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:209714600-209718600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:209715200-209716800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:209715200-209717600	Enhancers	NHEK	skin
5	chr1:209715200-209718000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:209715200-209718400	Enhancers	HMEC	breast
7	chr1:209715600-209716600	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links