Variant report

Variant	rs575250494
Chromosome Location	chr3:160603086-160603087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv32963	chr3:160555238-160603116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3391648	chr3:160602299-160620598	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160596400-160603800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr3:160598000-160603400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:160601600-160603200	Weak transcription	Left Ventricle	heart
4	chr3:160602000-160603200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr3:160602000-160603200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr3:160602200-160604600	Enhancers	Fetal Thymus	thymus
7	chr3:160602200-160604600	Enhancers	Thymus	Thymus
8	chr3:160602400-160603200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:160602800-160603200	Enhancers	Dnd41	blood
10	chr3:160602800-160603400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:160602800-160604400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:160602800-160604400	Enhancers	Brain Angular Gyrus	brain
13	chr3:160603000-160603400	Enhancers	Brain Hippocampus Middle	brain
14	chr3:160603000-160604000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:160603000-160604400	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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