Variant report

Variant	rs57526364
Chromosome Location	chr3:179061470-179061471
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:179051037..179052899-chr3:179059688..179061883,2	MCF-7	breast:
2	chr3:179058180..179060187-chr3:179061316..179064047,2	MCF-7	breast:
3	chr3:179060741..179062654-chr3:179062862..179064389,2	K562	blood:
4	chr3:179051794..179054722-chr3:179061170..179063608,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11916825	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11919840	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11925064	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11925248	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11927084	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13317510	0.89[AMR][1000 genomes]
rs16830445	0.89[AMR][1000 genomes]
rs16830460	0.89[AMR][1000 genomes]
rs28512433	0.89[AMR][1000 genomes]
rs28522651	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55805052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56210820	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56265474	0.89[AMR][1000 genomes]
rs56280435	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57148977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57795346	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58741861	0.89[AMR][1000 genomes]
rs59062224	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59333548	0.89[AMR][1000 genomes]
rs59511701	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59564372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59833817	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60191176	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60746059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61246771	0.89[AMR][1000 genomes]
rs61325843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6778235	0.89[AMR][1000 genomes]
rs6800044	0.89[AMR][1000 genomes]
rs6808033	0.89[AMR][1000 genomes]
rs6808866	1.00[AMR][1000 genomes]
rs73043406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043409	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73043413	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043415	0.92[AFR][1000 genomes]
rs73045191	0.89[AMR][1000 genomes]
rs73045195	0.89[AMR][1000 genomes]
rs73045198	0.89[AMR][1000 genomes]
rs73059758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73059766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355835	0.89[AMR][1000 genomes]
rs73883508	0.89[AMR][1000 genomes]
rs73883509	0.89[AMR][1000 genomes]
rs73886620	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7611533	0.89[AMR][1000 genomes]
rs7625719	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814990	0.89[AMR][1000 genomes]
rs9829054	0.89[AMR][1000 genomes]
rs9834493	0.89[AMR][1000 genomes]
rs9861354	0.89[AMR][1000 genomes]
rs9864857	0.89[AMR][1000 genomes]
rs9872939	0.89[AMR][1000 genomes]
rs9884070	0.89[AMR][1000 genomes]
rs9968068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9968069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9968075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9968076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv1002962	chr3:178943753-179224548	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv536815	chr3:178943753-179224548	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1003021	chr3:178944806-179246179	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv1006584	chr3:178944822-179241429	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv829806	chr3:178952363-179154373	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv471116	chr3:178968634-179252263	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv592650	chr3:178968634-179252263	Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
11	nsv1010513	chr3:178976107-179196274	Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
12	nsv536816	chr3:178976107-179196274	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
13	nsv1003514	chr3:178990037-179177029	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179043400-179065200	Weak transcription	Stomach Mucosa	stomach
2	chr3:179048800-179064200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:179049200-179064200	Weak transcription	Fetal Brain Male	brain
4	chr3:179051600-179064200	Weak transcription	Right Ventricle	heart
5	chr3:179051800-179064200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:179051800-179064200	Weak transcription	Primary T cells from cord blood	blood
7	chr3:179051800-179064200	Weak transcription	Brain Angular Gyrus	brain
8	chr3:179051800-179064200	Weak transcription	Esophagus	oesophagus
9	chr3:179051800-179064200	Weak transcription	Ovary	ovary
10	chr3:179051800-179064200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:179051800-179064200	Weak transcription	Thymus	Thymus
12	chr3:179051800-179064200	Weak transcription	NHLF	lung
13	chr3:179051800-179065200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr3:179051800-179065200	Weak transcription	Spleen	Spleen
15	chr3:179052000-179064000	Weak transcription	Fetal Kidney	kidney
16	chr3:179052000-179064200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:179052000-179065200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:179052200-179064000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:179052200-179064200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:179052200-179064200	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:179052200-179064200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:179052200-179065200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr3:179052400-179064200	Weak transcription	Psoas Muscle	Psoas
24	chr3:179052800-179064200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr3:179052800-179065200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr3:179053200-179064000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:179053200-179064000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:179053200-179064000	Weak transcription	HepG2	liver
29	chr3:179053200-179064200	Weak transcription	Aorta	Aorta
30	chr3:179053200-179064200	Weak transcription	Lung	lung
31	chr3:179053200-179064200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr3:179053200-179064200	Weak transcription	HSMMtube	muscle
33	chr3:179053200-179064800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr3:179053400-179064200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr3:179053400-179064200	Weak transcription	Primary B cells from cord blood	blood
36	chr3:179053400-179064200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:179053400-179064200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr3:179053600-179064000	Weak transcription	Fetal Lung	lung
39	chr3:179053600-179064000	Weak transcription	Fetal Muscle Trunk	muscle
40	chr3:179053600-179064200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:179053600-179064200	Weak transcription	NHEK	skin
42	chr3:179053800-179064200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr3:179053800-179065200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:179053800-179065200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr3:179054000-179064000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:179054000-179064200	Weak transcription	Placenta	Placenta
47	chr3:179054000-179064200	Weak transcription	Left Ventricle	heart
48	chr3:179054200-179064000	Weak transcription	GM12878-XiMat	blood
49	chr3:179054400-179064000	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr3:179054600-179064000	Weak transcription	Muscle Satellite Cultured Cells	--

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