Variant report

Variant	rs5752667
Chromosome Location	chr22:28349827-28349828
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs118839	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs138631	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs138638	0.89[CEU][hapmap];0.82[CHB][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs138650	0.89[CEU][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs138675	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs138685	0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1548235	0.82[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2038158	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2092054	0.82[ASN][1000 genomes]
rs2267121	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2267124	0.86[ASN][1000 genomes]
rs4140571	0.89[CEU][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs470100	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs470105	0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs5762393	0.85[ASN][1000 genomes]
rs5762416	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5762418	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5997319	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs6005671	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs720621	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73425788	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs738451	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7625	0.86[ASN][1000 genomes]
rs957601	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28316400-28358600	Weak transcription	Placenta	Placenta
2	chr22:28316400-28370200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr22:28316400-28376800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr22:28316400-28378000	Weak transcription	Esophagus	oesophagus
5	chr22:28318800-28382000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr22:28319600-28358000	Weak transcription	Brain Germinal Matrix	brain
7	chr22:28319600-28383000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr22:28321000-28354800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr22:28321200-28358400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr22:28321400-28379000	Weak transcription	Primary B cells from cord blood	blood
11	chr22:28322000-28365200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr22:28322000-28366200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr22:28326800-28368600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr22:28329400-28377800	Weak transcription	Primary T cells from cord blood	blood
15	chr22:28339400-28352400	Weak transcription	Fetal Stomach	stomach
16	chr22:28339400-28367800	Weak transcription	Fetal Intestine Small	intestine
17	chr22:28346000-28356600	Weak transcription	HepG2	liver
18	chr22:28347600-28355200	Weak transcription	Left Ventricle	heart
19	chr22:28348400-28355400	Weak transcription	Ovary	ovary
20	chr22:28348400-28357800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr22:28348800-28352400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr22:28348800-28358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr22:28348800-28358400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr22:28349200-28350400	Weak transcription	NHDF-Ad	bronchial
25	chr22:28349200-28355000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr22:28349200-28355200	Weak transcription	Psoas Muscle	Psoas
27	chr22:28349200-28358400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr22:28349400-28351200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr22:28349400-28358000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr22:28349600-28354800	Weak transcription	Liver	Liver
31	chr22:28349600-28355400	Weak transcription	Fetal Lung	lung

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