Variant report

Variant	rs5752692
Chromosome Location	chr22:28480119-28480120
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs5762430	0.93[CEU][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs5762456	0.93[CEU][hapmap]
rs59105820	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28449600-28488200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr22:28466400-28489800	Weak transcription	Fetal Brain Male	brain
3	chr22:28466600-28503600	Weak transcription	Hela-S3	cervix
4	chr22:28468600-28489800	Weak transcription	Fetal Kidney	kidney
5	chr22:28470000-28486800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr22:28471600-28487400	Weak transcription	Brain Hippocampus Middle	brain
7	chr22:28471600-28491800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr22:28471800-28486600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr22:28471800-28486800	Weak transcription	Adipose Nuclei	Adipose
10	chr22:28471800-28488400	Weak transcription	Left Ventricle	heart
11	chr22:28471800-28491400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr22:28471800-28492000	Weak transcription	Aorta	Aorta
13	chr22:28472000-28487400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr22:28472000-28489600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr22:28472000-28489800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr22:28472000-28494800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr22:28472000-28499000	Weak transcription	NHDF-Ad	bronchial
18	chr22:28472200-28498600	Weak transcription	Colon Smooth Muscle	Colon
19	chr22:28472400-28494200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr22:28472800-28495400	Weak transcription	Pancreas	Pancrea
21	chr22:28472800-28501000	Weak transcription	Gastric	stomach
22	chr22:28474000-28488600	Weak transcription	Fetal Lung	lung
23	chr22:28475200-28489800	Weak transcription	Fetal Heart	heart
24	chr22:28475400-28487400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr22:28478600-28480400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr22:28479000-28480400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr22:28479000-28480400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr22:28479200-28480200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr22:28479200-28480400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
30	chr22:28479200-28480400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr22:28479200-28480400	ZNF genes & repeats	Brain Germinal Matrix	brain
32	chr22:28479400-28480200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
33	chr22:28479400-28480400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr22:28479600-28480400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr22:28479600-28480400	ZNF genes & repeats	Fetal Intestine Small	intestine
36	chr22:28479600-28480400	ZNF genes & repeats	Fetal Stomach	stomach
37	chr22:28479600-28480400	ZNF genes & repeats	Dnd41	blood
38	chr22:28479600-28481000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr22:28480000-28480200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr22:28480000-28480200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
41	chr22:28480000-28480200	ZNF genes & repeats	Spleen	Spleen
42	chr22:28480000-28480400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr22:28480000-28480400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr22:28480000-28480400	ZNF genes & repeats	Fetal Brain Female	brain
45	chr22:28480000-28480400	ZNF genes & repeats	Fetal Muscle Leg	muscle
46	chr22:28480000-28480400	ZNF genes & repeats	Ovary	ovary

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