Variant report

Variant	rs57526954
Chromosome Location	chr20:23596014-23596015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16985605	0.90[AFR][1000 genomes]
rs1966182	1.00[EUR][1000 genomes]
rs2405390	1.00[EUR][1000 genomes]
rs2405391	1.00[EUR][1000 genomes]
rs56326647	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60014744	0.90[AFR][1000 genomes]
rs60569976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106686	1.00[EUR][1000 genomes]
rs6114187	1.00[EUR][1000 genomes]
rs6114188	1.00[EUR][1000 genomes]
rs6114193	1.00[EUR][1000 genomes]
rs6114194	1.00[EUR][1000 genomes]
rs6515370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7273129	0.89[AFR][1000 genomes]
rs73902104	1.00[EUR][1000 genomes]
rs8115973	0.96[AFR][1000 genomes]
rs8121220	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23595200-23601600	Weak transcription	Lung	lung
2	chr20:23595200-23603400	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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