Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10899812	0.89[ASN][1000 genomes]
rs11238567	0.95[ASN][1000 genomes]
rs1338558	0.91[ASN][1000 genomes]
rs2393950	0.91[ASN][1000 genomes]
rs2999226	0.89[ASN][1000 genomes]
rs2999227	0.91[ASN][1000 genomes]
rs3006399	0.89[ASN][1000 genomes]
rs3006400	0.89[ASN][1000 genomes]
rs3006401	0.91[ASN][1000 genomes]
rs3006402	0.91[ASN][1000 genomes]
rs3006406	0.95[ASN][1000 genomes]
rs3006407	0.95[ASN][1000 genomes]
rs3999097	0.89[ASN][1000 genomes]
rs4948738	0.83[AFR][1000 genomes]
rs60241506	0.87[AFR][1000 genomes]
rs61859999	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74137742	0.86[AFR][1000 genomes]
rs74137744	0.85[AFR][1000 genomes]
rs74137746	0.86[AFR][1000 genomes]
rs74137748	0.86[AFR][1000 genomes]
rs74137749	0.87[AFR][1000 genomes]
rs74137751	0.89[AFR][1000 genomes]
rs7901121	0.95[ASN][1000 genomes]
rs7901252	0.87[AFR][1000 genomes]
rs7901608	0.87[AFR][1000 genomes]
rs7907072	0.87[AFR][1000 genomes]
rs7907236	0.84[AFR][1000 genomes]
rs7909278	0.85[AFR][1000 genomes]
rs9422519	0.95[ASN][1000 genomes]
rs9919396	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1051325	chr10:43988273-44022473	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43987400-44003200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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