Variant report

Variant	rs5752722
Chromosome Location	chr22:28728430-28728431
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs5762524	1.00[AMR][1000 genomes]
rs5762533	1.00[AMR][1000 genomes]
rs5762537	1.00[AMR][1000 genomes]
rs5762621	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28724800-28729600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr22:28725800-28728800	Weak transcription	Fetal Heart	heart
3	chr22:28726000-28728600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr22:28726000-28728600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr22:28726000-28728800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr22:28726200-28737400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr22:28726400-28728800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr22:28726400-28728800	Weak transcription	Brain Angular Gyrus	brain
9	chr22:28726400-28729400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr22:28726600-28728600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr22:28726600-28728600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr22:28726600-28728600	Weak transcription	Fetal Brain Female	brain
13	chr22:28727400-28729000	Enhancers	Brain Hippocampus Middle	brain
14	chr22:28727600-28729600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr22:28727800-28728600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr22:28727800-28729000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr22:28727800-28729000	Enhancers	Adipose Nuclei	Adipose
18	chr22:28727800-28729600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr22:28728000-28728800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr22:28728200-28728600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr22:28728200-28729600	Enhancers	Fetal Lung	lung
22	chr22:28728400-28729000	Enhancers	Brain Substantia Nigra	brain
23	chr22:28728400-28729600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr22:28728400-28729600	Enhancers	Brain Anterior Caudate	brain

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