Variant report

Variant	rs5752745
Chromosome Location	chr22:28845881-28845882
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11090535	1.00[YRI][hapmap]
rs134529	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs134545	0.89[JPT][hapmap]
rs17412920	0.85[CEU][hapmap]
rs1807603	0.96[ASN][1000 genomes]
rs2145161	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2180460	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs5752729	0.83[CEU][hapmap]
rs5752763	0.87[ASN][1000 genomes]
rs5752764	0.82[ASN][1000 genomes]
rs5762586	0.87[ASN][1000 genomes]
rs5762622	0.83[CEU][hapmap]
rs5762629	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs5762654	0.83[CEU][hapmap]
rs5762656	0.85[CEU][hapmap]
rs5762665	0.95[ASN][1000 genomes]
rs5762680	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs5762683	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5762730	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs5762737	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7288416	0.85[CEU][hapmap]
rs9306454	0.85[CEU][hapmap]
rs9306458	0.81[CEU][hapmap]
rs9613617	0.81[CEU][hapmap]
rs9613630	0.85[CEU][hapmap]
rs9613658	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28839800-28861200	Weak transcription	Ovary	ovary
2	chr22:28840000-28847000	Weak transcription	Fetal Lung	lung
3	chr22:28840000-28849600	Weak transcription	Fetal Brain Male	brain
4	chr22:28842600-28849600	Weak transcription	Psoas Muscle	Psoas
5	chr22:28844200-28846000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr22:28844600-28846000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr22:28844800-28846000	Enhancers	HUVEC	blood vessel
8	chr22:28845200-28846800	Weak transcription	Fetal Intestine Small	intestine
9	chr22:28845400-28846000	Weak transcription	Fetal Intestine Large	intestine
10	chr22:28845400-28850000	Weak transcription	Fetal Brain Female	brain
11	chr22:28845800-28846200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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