Variant report

Variant rs5752840
Chromosome Location chr22:29348003-29348004
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:29339800-29352600 Weak transcription Stomach Mucosa stomach
2 chr22:29340000-29349200 Weak transcription Aorta Aorta
3 chr22:29345200-29350800 Enhancers Fetal Muscle Leg muscle
4 chr22:29345400-29349800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
5 chr22:29345400-29350000 Enhancers Breast Myoepithelial Primary Cells Breast
6 chr22:29345400-29350000 Enhancers Fetal Lung lung
7 chr22:29345600-29349600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr22:29345600-29350200 Enhancers Fetal Kidney kidney
9 chr22:29345800-29349400 Enhancers iPS-15b Cell Line embryonic stem cell
10 chr22:29345800-29349800 Enhancers iPS-20b Cell Line embryonic stem cell
11 chr22:29345800-29350000 Enhancers Rectal Smooth Muscle rectum
12 chr22:29345800-29350600 Enhancers Skeletal Muscle Female skeletal muscle
13 chr22:29345800-29351200 Enhancers Skeletal Muscle Male skeletal muscle
14 chr22:29346000-29348600 Enhancers Cortex derived primary cultured neurospheres brain
15 chr22:29346000-29350000 Enhancers Liver Liver
16 chr22:29346200-29348400 Enhancers Brain Anterior Caudate brain
17 chr22:29346400-29348200 Enhancers Brain Cingulate Gyrus brain
18 chr22:29346400-29353800 Weak transcription NHEK skin
19 chr22:29346400-29357400 Weak transcription Brain Inferior Temporal Lobe brain
20 chr22:29346600-29348200 Weak transcription A549 lung
21 chr22:29346600-29348400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr22:29346600-29352800 Weak transcription Brain Substantia Nigra brain
23 chr22:29347000-29350800 Enhancers Placenta Placenta
24 chr22:29347200-29348400 Enhancers ES-WA7 Cell Line embryonic stem cell
25 chr22:29347200-29348600 Enhancers Brain Hippocampus Middle brain
26 chr22:29347200-29349600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr22:29347200-29350400 Enhancers Osteobl bone
28 chr22:29347400-29348200 Enhancers Lung lung
29 chr22:29347400-29348400 Bivalent Enhancer Fetal Thymus thymus
30 chr22:29347400-29348400 Enhancers Right Atrium heart
31 chr22:29347400-29348600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr22:29347400-29349000 Weak transcription Right Ventricle heart
33 chr22:29347400-29349400 Enhancers ES-I3 Cell Line embryonic stem cell
34 chr22:29347400-29349400 Enhancers H1 Cell Line embryonic stem cell
35 chr22:29347400-29349400 Enhancers HUES6 Cell Line embryonic stem cell
36 chr22:29347400-29349400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
37 chr22:29347400-29350000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr22:29347400-29350400 Enhancers Fetal Intestine Large intestine
39 chr22:29347400-29350400 Genic enhancers Fetal Intestine Small intestine
40 chr22:29347400-29350400 Enhancers Ovary ovary
41 chr22:29347600-29348200 Enhancers H9 Cell Line embryonic stem cell
42 chr22:29347600-29348200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
43 chr22:29347600-29348200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
44 chr22:29347600-29348200 Flanking Active TSS Colon Smooth Muscle Colon
45 chr22:29347600-29348200 Enhancers Pancreas Pancrea
46 chr22:29347600-29348200 Enhancers HSMM muscle
47 chr22:29347600-29348400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
48 chr22:29347600-29348400 Enhancers Esophagus oesophagus
49 chr22:29347600-29348400 Enhancers Left Ventricle heart
50 chr22:29347600-29348400 Flanking Active TSS Stomach Smooth Muscle stomach

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