Variant report

Variant	rs57528434
Chromosome Location	chr14:66257454-66257455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66249714..66253526-chr14:66254626..66258176,3	MCF-7	breast:
2	chr14:66221986..66224383-chr14:66256586..66258647,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs55674739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56258162	1.00[EUR][1000 genomes]
rs56350757	1.00[EUR][1000 genomes]
rs56395501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57228058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58873346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60009307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60225754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60789318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61016861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056804	1.00[EUR][1000 genomes]
rs74056807	1.00[EUR][1000 genomes]
rs74056811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056844	0.95[AFR][1000 genomes]
rs74056845	0.95[AFR][1000 genomes]
rs74056849	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74056851	0.95[AFR][1000 genomes]
rs74056852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058523	1.00[EUR][1000 genomes]
rs74058524	1.00[EUR][1000 genomes]
rs74058528	1.00[EUR][1000 genomes]
rs74058539	1.00[EUR][1000 genomes]
rs74058545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv817409	chr14:66220075-66990168	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv1052389	chr14:66255781-66321562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66256400-66258200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:66256400-66258200	Weak transcription	Spleen	Spleen
3	chr14:66256400-66259200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr14:66256600-66257600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr14:66256600-66257600	Enhancers	Brain Germinal Matrix	brain
6	chr14:66256600-66260200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:66256800-66258200	Weak transcription	Fetal Lung	lung
8	chr14:66257000-66257600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:66257200-66258600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:66257200-66259400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr14:66257400-66258200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr14:66257400-66258400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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