Variant report

Variant	rs5752863
Chromosome Location	chr22:29462619-29462620
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13058510	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2294242	0.93[EUR][1000 genomes]
rs34101206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34967120	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs5752866	0.93[EUR][1000 genomes]
rs5762981	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5762982	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5762985	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5762986	0.93[EUR][1000 genomes]
rs71327333	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29451800-29465200	Weak transcription	Fetal Intestine Small	intestine
2	chr22:29451800-29467000	Weak transcription	Ovary	ovary
3	chr22:29455800-29465600	Weak transcription	K562	blood
4	chr22:29458600-29466600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr22:29458800-29463200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr22:29459000-29465400	Weak transcription	Psoas Muscle	Psoas
7	chr22:29461000-29463800	Enhancers	Dnd41	blood
8	chr22:29461200-29462800	Enhancers	Fetal Muscle Leg	muscle
9	chr22:29461200-29463000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr22:29461200-29464000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr22:29461400-29464000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr22:29462200-29463200	Bivalent Enhancer	Primary T cells from cord blood	blood
13	chr22:29462200-29467800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr22:29462400-29465000	Weak transcription	HepG2	liver
15	chr22:29462400-29465800	Weak transcription	Thymus	Thymus
16	chr22:29462400-29467800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr22:29462400-29467800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr22:29462600-29465000	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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