The 2.0 version of rSNPBase

Variant report

Variant rs575286880
Chromosome Location chr12:26228726-26228727
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:26200800-26229000 Weak transcription Fetal Muscle Trunk muscle
2 chr12:26201200-26234600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr12:26201600-26236200 Weak transcription Right Ventricle heart
4 chr12:26206800-26229600 Weak transcription Ovary ovary
5 chr12:26206800-26229800 Weak transcription Stomach Smooth Muscle stomach
6 chr12:26208400-26234600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr12:26209600-26230400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr12:26211600-26234600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr12:26211800-26230800 Weak transcription Fetal Lung lung
10 chr12:26215200-26230200 Weak transcription Adipose Nuclei Adipose
11 chr12:26215800-26230800 Weak transcription A549 lung
12 chr12:26216000-26228800 Weak transcription HSMM muscle
13 chr12:26216000-26229200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr12:26216000-26230400 Weak transcription Psoas Muscle Psoas
15 chr12:26216000-26230600 Weak transcription HMEC breast
16 chr12:26216000-26230800 Weak transcription NHLF lung
17 chr12:26216000-26231000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr12:26216200-26230800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr12:26216200-26231000 Weak transcription NH-A brain
20 chr12:26221800-26230800 Weak transcription Fetal Stomach stomach
21 chr12:26221800-26234000 Weak transcription Fetal Intestine Small intestine
22 chr12:26222000-26230800 Weak transcription NHEK skin
23 chr12:26222000-26234600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr12:26222400-26230200 Weak transcription HUVEC blood vessel
25 chr12:26222400-26230400 Weak transcription Left Ventricle heart
26 chr12:26222400-26234000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr12:26222800-26245800 Weak transcription Muscle Satellite Cultured Cells --
28 chr12:26223200-26230800 Weak transcription Osteobl bone
29 chr12:26223400-26230600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr12:26224000-26230800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr12:26224000-26234000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr12:26226200-26230800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr12:26227600-26229000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr12:26228000-26229000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr12:26228000-26231000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr12:26228200-26228800 Strong transcription NHDF-Ad bronchial
37 chr12:26228400-26229000 Strong transcription Breast Myoepithelial Primary Cells Breast
38 chr12:26228400-26230400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr12:26228600-26228800 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr12:26228600-26229000 ZNF genes & repeats Aorta Aorta

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Last update: Aug 31, 2015