Variant report

Variant	rs575290868
Chromosome Location	chr11:63529246-63529247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63526116..63528464-chr11:63528882..63530638,2	K562	blood:
2	chr11:63527527..63531451-chr11:63579707..63582153,3	MCF-7	breast:
3	chr11:63528210..63531118-chr11:63540362..63542813,2	MCF-7	breast:
4	chr11:63520245..63522926-chr11:63528476..63531329,2	MCF-7	breast:
5	chr11:63438066..63440126-chr11:63528980..63530613,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATL3-1	chr11:63527369-63529844	NONHSAT021901

No data

Variant related genes	Relation type
ENSG00000184743	Chromatin interaction
ENSG00000168005	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	esv3427424	chr11:63529176-63532974	Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63473000-63529400	Weak transcription	Right Ventricle	heart
2	chr11:63491000-63529600	Weak transcription	Pancreas	Pancrea
3	chr11:63501800-63530000	Weak transcription	Psoas Muscle	Psoas
4	chr11:63509000-63534800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:63511000-63534800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:63511200-63529800	Weak transcription	Stomach Mucosa	stomach
7	chr11:63515000-63529800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:63516000-63534800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:63516400-63533400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:63516400-63534200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr11:63516600-63533800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:63516800-63530000	Weak transcription	Esophagus	oesophagus
13	chr11:63517400-63530000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:63518800-63530000	Weak transcription	Aorta	Aorta
15	chr11:63519400-63534800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr11:63520400-63533400	Weak transcription	GM12878-XiMat	blood
17	chr11:63520800-63529400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:63520800-63529400	Weak transcription	NHEK	skin
19	chr11:63520800-63529600	Weak transcription	Colonic Mucosa	Colon
20	chr11:63521200-63529400	Weak transcription	Brain Substantia Nigra	brain
21	chr11:63521200-63534600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr11:63521400-63529400	Weak transcription	Brain Anterior Caudate	brain
23	chr11:63521400-63529600	Weak transcription	NH-A	brain
24	chr11:63521400-63534400	Weak transcription	Primary B cells from cord blood	blood
25	chr11:63521400-63534800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr11:63523400-63532600	Strong transcription	Fetal Thymus	thymus
27	chr11:63523400-63533600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:63523600-63529600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:63523600-63529600	Strong transcription	Fetal Intestine Small	intestine
30	chr11:63523600-63533400	Strong transcription	Dnd41	blood
31	chr11:63523800-63529400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:63523800-63530600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:63524400-63529400	Strong transcription	Osteobl	bone
34	chr11:63525000-63534400	Weak transcription	HSMMtube	muscle
35	chr11:63525400-63529800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:63525400-63530200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:63525400-63532000	Weak transcription	Spleen	Spleen
38	chr11:63525600-63530000	Weak transcription	Lung	lung
39	chr11:63525600-63532200	Weak transcription	HepG2	liver
40	chr11:63525800-63529400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:63525800-63529800	Weak transcription	Gastric	stomach
42	chr11:63525800-63534600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr11:63526000-63529400	Weak transcription	Brain Angular Gyrus	brain
44	chr11:63526200-63534600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr11:63526400-63529400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:63526400-63529600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:63526400-63529800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr11:63526400-63530000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr11:63526600-63529800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:63526600-63529800	Weak transcription	Rectal Mucosa Donor 29	rectum

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