Variant report
Variant | rs57529292 |
---|---|
Chromosome Location | chr10:91589142-91589143 |
allele | -/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | E2F6 | chr10:91589087-91589282 | K562 | blood: | n/a | chr10:91589231-91589242 chr10:91589227-91589236 chr10:91589226-91589241 chr10:91589231-91589242 |
No data |
No data |
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-KIF20B-2 | chr10:91586955-91590598 | NONHSAT015541 |
2 | lnc-KIF20B-2 | chr10:91586955-91590598 | NONHSAT015542 |
No data |
No data |
Variant related genes | Relation type |
---|---|
LINC00865 | TF binding region |
rs_ID | r2[population] |
---|---|
rs1125326 | 0.88[EUR][1000 genomes] |
rs12240414 | 0.89[EUR][1000 genomes] |
rs12244597 | 0.88[EUR][1000 genomes] |
rs12252414 | 0.89[EUR][1000 genomes] |
rs12263026 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12763984 | 0.88[EUR][1000 genomes] |
rs12766364 | 0.88[EUR][1000 genomes] |
rs12773439 | 0.88[EUR][1000 genomes] |
rs1326198 | 0.86[EUR][1000 genomes] |
rs1326199 | 0.89[EUR][1000 genomes] |
rs17127746 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs17127968 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17128049 | 0.81[EUR][1000 genomes] |
rs17385594 | 0.89[EUR][1000 genomes] |
rs2148276 | 0.88[EUR][1000 genomes] |
rs2182397 | 0.88[EUR][1000 genomes] |
rs34395627 | 0.88[EUR][1000 genomes] |
rs34407717 | 0.88[EUR][1000 genomes] |
rs34498741 | 0.88[EUR][1000 genomes] |
rs34498979 | 0.88[EUR][1000 genomes] |
rs34548995 | 0.89[EUR][1000 genomes] |
rs34833458 | 0.88[EUR][1000 genomes] |
rs35305443 | 0.88[EUR][1000 genomes] |
rs35494197 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs35495765 | 0.88[EUR][1000 genomes] |
rs35557724 | 0.88[EUR][1000 genomes] |
rs35768372 | 0.88[EUR][1000 genomes] |
rs36067049 | 0.88[EUR][1000 genomes] |
rs36075457 | 0.88[EUR][1000 genomes] |
rs3740040 | 0.89[EUR][1000 genomes] |
rs3740042 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs3802651 | 0.89[EUR][1000 genomes] |
rs55932503 | 0.89[EUR][1000 genomes] |
rs55977662 | 0.88[EUR][1000 genomes] |
rs56246606 | 0.88[EUR][1000 genomes] |
rs56318801 | 0.88[EUR][1000 genomes] |
rs57160906 | 0.88[EUR][1000 genomes] |
rs57585079 | 0.88[EUR][1000 genomes] |
rs57603165 | 0.88[EUR][1000 genomes] |
rs58250931 | 0.81[EUR][1000 genomes] |
rs58929000 | 0.88[EUR][1000 genomes] |
rs58933281 | 0.81[EUR][1000 genomes] |
rs60634654 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs60925336 | 0.88[EUR][1000 genomes] |
rs61128077 | 0.88[EUR][1000 genomes] |
rs61303211 | 0.88[EUR][1000 genomes] |
rs68147789 | 0.90[EUR][1000 genomes] |
rs7076194 | 0.90[EUR][1000 genomes] |
rs7076219 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7475158 | 0.88[EUR][1000 genomes] |
rs7895272 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7895530 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7895851 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7895863 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7899499 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7908739 | 0.89[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1046241 | chr10:91478562-91614437 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
2 | nsv869080 | chr10:91498641-91712834 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
3 | nsv1036581 | chr10:91526705-91691536 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
4 | nsv1043571 | chr10:91568555-92036154 | Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
5 | nsv551874 | chr10:91570211-92036154 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
6 | nsv949678 | chr10:91589048-92016474 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
No data |