Variant report

Variant	rs57529747
Chromosome Location	chr13:30167367-30167368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30086955..30089041-chr13:30166781..30169428,2	MCF-7	breast:
2	chr13:30145040..30147217-chr13:30165008..30167643,2	K562	blood:
3	chr13:30165310..30167432-chr13:30231633..30234187,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1553951	0.92[ASN][1000 genomes]
rs1553952	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17604270	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17604461	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17604530	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17604551	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17604620	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17661926	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17662246	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2036975	0.92[ASN][1000 genomes]
rs56981794	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59204380	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6490413	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6490414	0.92[ASN][1000 genomes]
rs7989604	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7990065	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7990834	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7998250	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7999212	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8000157	0.92[ASN][1000 genomes]
rs9578113	0.92[ASN][1000 genomes]
rs9579421	0.92[ASN][1000 genomes]
rs9579422	0.92[ASN][1000 genomes]
rs9579423	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv979	chr13:30122254-30167821	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30128800-30168200	Weak transcription	Primary T cells from cord blood	blood
2	chr13:30148400-30167400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr13:30152600-30168200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:30156400-30168400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr13:30156800-30168200	Weak transcription	Fetal Brain Female	brain
6	chr13:30156800-30168400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr13:30157200-30168400	Weak transcription	Brain Germinal Matrix	brain
8	chr13:30157600-30168200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr13:30157600-30168200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr13:30157800-30168200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr13:30157800-30168400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr13:30157800-30168400	Weak transcription	Small Intestine	intestine
13	chr13:30157800-30168600	Weak transcription	Ovary	ovary
14	chr13:30158000-30168600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr13:30158200-30168400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:30159400-30168200	Weak transcription	Brain Angular Gyrus	brain
17	chr13:30160000-30167400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr13:30160000-30168400	Weak transcription	Psoas Muscle	Psoas
19	chr13:30161400-30167400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr13:30162000-30168400	Weak transcription	Aorta	Aorta
21	chr13:30162200-30168400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr13:30162600-30167800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr13:30162600-30168200	Weak transcription	Primary B cells from cord blood	blood
24	chr13:30162600-30168200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr13:30163000-30167600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:30163000-30167800	Enhancers	NHDF-Ad	bronchial
27	chr13:30163200-30167600	Enhancers	Pancreas	Pancrea
28	chr13:30164000-30168000	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr13:30164000-30168400	Weak transcription	Fetal Stomach	stomach
30	chr13:30164000-30168600	Weak transcription	Right Atrium	heart
31	chr13:30164000-30168600	Weak transcription	Thymus	Thymus
32	chr13:30164400-30168200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr13:30164400-30168200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr13:30164400-30168400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr13:30164400-30168400	Weak transcription	Brain Hippocampus Middle	brain
36	chr13:30164400-30168400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr13:30164400-30168600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr13:30164600-30167800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr13:30164600-30168000	Weak transcription	Fetal Brain Male	brain
40	chr13:30164600-30168200	Weak transcription	Colon Smooth Muscle	Colon
41	chr13:30164800-30167400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr13:30164800-30168200	Weak transcription	Fetal Intestine Small	intestine
43	chr13:30164800-30168200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr13:30164800-30168400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr13:30164800-30168400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr13:30164800-30168400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr13:30164800-30168400	Weak transcription	Fetal Muscle Leg	muscle
48	chr13:30164800-30168400	Weak transcription	Gastric	stomach
49	chr13:30165000-30168200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr13:30165400-30167400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links