Variant report

Variant	rs575300261
Chromosome Location	chr2:67899028-67899029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv834250	chr2:67897722-68051532	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3417796	chr2:67897748-67901146	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	esv3417694	chr2:67897748-67901346	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3350211	chr2:67897948-67901146	Genic enhancers Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67893200-67903600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr2:67893600-67903000	Weak transcription	Left Ventricle	heart
3	chr2:67893800-67899200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:67894800-67899200	Weak transcription	Fetal Lung	lung
5	chr2:67896600-67899200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:67897200-67900400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr2:67897600-67899200	Weak transcription	Fetal Brain Male	brain
8	chr2:67897600-67899200	Enhancers	Fetal Intestine Large	intestine
9	chr2:67898000-67899200	Enhancers	HepG2	liver
10	chr2:67898000-67899400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:67898400-67899200	Weak transcription	Fetal Kidney	kidney
12	chr2:67898400-67899400	Weak transcription	Spleen	Spleen
13	chr2:67898600-67899200	Enhancers	GM12878-XiMat	blood
14	chr2:67899000-67899200	Enhancers	Pancreas	Pancrea
15	chr2:67899000-67899600	Enhancers	Psoas Muscle	Psoas
16	chr2:67899000-67900000	Enhancers	Right Atrium	heart
17	chr2:67899000-67900200	Enhancers	Right Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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