Variant report

Variant	rs57530500
Chromosome Location	chr2:76962178-76962179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs59898270	1.00[AMR][1000 genomes]
rs72917747	1.00[AMR][1000 genomes]
rs72917757	1.00[AMR][1000 genomes]
rs72917761	1.00[AMR][1000 genomes]
rs72917770	1.00[AMR][1000 genomes]
rs72917772	1.00[AMR][1000 genomes]
rs72917775	1.00[AMR][1000 genomes]
rs72917784	1.00[AMR][1000 genomes]
rs72917786	1.00[AMR][1000 genomes]
rs72917798	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874319	chr2:76949101-76979415	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76960800-76963000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:76960800-76974600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:76961200-76963200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:76961600-76963200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:76961600-76967200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:76961800-76964600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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